internal static PatchTable GetInstanceWithUniformWeightByLength(IList <PatchPattern> patchPatternCollection)
{
PatchTable patchTable = new PatchTable();
patchTable.PatchTableScorer = PatchTableScorer.GetInstance("normal");
int totalLength = 0;
foreach (PatchPattern patchPattern in patchPatternCollection)
{
totalLength += patchPattern.FullLength;
}
foreach (PatchPattern patchPattern in patchPatternCollection)
{
double weight = (double)patchPattern.FullLength / (double)totalLength;
patchTable.SetMaxPatchLength(patchPattern);
Patch aPatch = Patch.GetInstance(patchPattern, weight);
patchTable.Add(aPatch);
patchTable.CreateSortedArrays();
}
return(patchTable);
}
override public void FirstVaccine(PatchTable patchTable)
{
PatchTable = patchTable;
VaccineAsString = VaccineAsString.GetInstance(patchTable.MaxPatchLength, Name);
PointsInPatchTable = 0.0;
foreach (Patch aPatch in patchTable.SortedPatchCollection)
{
PointsInPatchTable += aPatch.Weight;
UnusedPatches.AddNew(aPatch);
}
Patch patchBest = patchTable.SortedPatchCollection[0];
MakePatchAComponent(patchBest);
}
static public PatchTable GetInstanceFromFile(PatchPatternFactory patchPatternFactory,
TextReader patchTableTextReader, string scorerName)
{
PatchTable patchTable = new PatchTable();
patchTable.PatchTableScorer = PatchTableScorer.GetInstance(scorerName);
foreach (Dictionary <string, string> row in SpecialFunctions.TabFileTable(patchTableTextReader, "Patch\tWeight", false))
{
PatchPattern patchPattern = patchPatternFactory.GetInstance(row["Patch"]);
double weight = double.Parse(row["Weight"]);
patchTable.SetMaxPatchLength(patchPattern);
Patch patch = Patch.GetInstance(patchPattern, weight);
patchTable.Add(patch);
}
patchTable.CreateSortedArrays();
return(patchTable);
}
static public PatchTable GetInstance(Dictionary <string, double> patchToWeight, string protein, string vaccineCriteriaName)
{
PatchTable patchTable = new PatchTable();
patchTable.PatchTableScorer = PatchTableScorer.GetInstance("normal");
PatchPatternFactory patchPatternFactory = PatchPatternFactory.GetFactory("strings");
patchTable.PatchPatternToPatch = new Dictionary <PatchPattern, Patch>();
foreach (KeyValuePair <string, double> patchAndWeight in patchToWeight)
{
string patchAsString = patchAndWeight.Key;
double weight = patchAndWeight.Value;
PatchPattern patchPattern = patchPatternFactory.GetInstance(patchAsString);
Patch aPatch = Patch.GetInstance(patchPattern, weight);
patchTable.Add(aPatch);
}
patchTable.CreateSortedArrays();
return(patchTable);
}
private double RealScore()
{
double r = PatchTable.Score(VaccineAsString);
return(r);
}
abstract public void FirstVaccine(PatchTable patchTable);
