public void unlabeled_agg()
{
double max_monoisotopic_mass = TestExperimentalProteoform.starter_mass + TestExperimentalProteoform.missed_monoisotopics * Lollipop.MONOISOTOPIC_UNIT_MASS;
double min_monoisotopic_mass = TestExperimentalProteoform.starter_mass - TestExperimentalProteoform.missed_monoisotopics * Lollipop.MONOISOTOPIC_UNIT_MASS;
List <IAggregatable> components = TestExperimentalProteoform.generate_unlabeled_components(TestExperimentalProteoform.starter_mass);
Sweet.lollipop.neucode_labeled = false;
Sweet.lollipop.remaining_to_aggregate = new List <IAggregatable>(components);
Sweet.lollipop.remaining_verification_components = new HashSet <Component>(components.OfType <Component>());
Sweet.lollipop.missed_monoisotopics_range = Enumerable.Range(-3, 3 * 2 + 1).ToList();
ExperimentalProteoform e = ConstructorsForTesting.ExperimentalProteoform("E");
e.root = components[0];
e.aggregate();
e.verify();
Assert.AreEqual(2, e.aggregated.Count);
Assert.AreEqual(2, e.lt_verification_components.Count);
Assert.AreEqual(0, e.hv_verification_components.Count); // everything goes into light with unlabeled
Assert.AreEqual(0, e.lt_quant_components.Count); // no quantitation for unlabeled, yet
Assert.AreEqual(0, e.hv_quant_components.Count);
}
public void unlabeled_agg()
{
SaveState.lollipop.min_num_bioreps = 0;
double max_monoisotopic_mass = TestExperimentalProteoform.starter_mass + TestExperimentalProteoform.missed_monoisotopics * Lollipop.MONOISOTOPIC_UNIT_MASS;
double min_monoisotopic_mass = TestExperimentalProteoform.starter_mass - TestExperimentalProteoform.missed_monoisotopics * Lollipop.MONOISOTOPIC_UNIT_MASS;
List <Component> components = TestExperimentalProteoform.generate_unlabeled_components(TestExperimentalProteoform.starter_mass);
SaveState.lollipop.neucode_labeled = false;
SaveState.lollipop.remaining_components = new List <Component>(components);
SaveState.lollipop.remaining_verification_components = new List <Component>(components);
ExperimentalProteoform e = ConstructorsForTesting.ExperimentalProteoform("E");
e.root = components[0];
e.aggregate();
e.verify();
Assert.AreEqual(2, e.aggregated_components.Count);
Assert.AreEqual(2, e.lt_verification_components.Count);
Assert.AreEqual(0, e.hv_verification_components.Count); // everything goes into light with unlabeled
Assert.AreEqual(0, e.lt_quant_components.Count); // no quantitation for unlabeled, yet
Assert.AreEqual(0, e.hv_quant_components.Count);
}
