private void select_DataSheet(object sender, RoutedEventArgs e)
{
//try
//{
//_thisRegDS = new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + this.partName.Text);
ds = new MenuDataSheet();
ds.ContainerManipulationCompleted += new ContainerManipulationCompletedEventHandler(onDSManipulationCompleted);
if (_myRegDS.Name != "test") //Already got data from registry, so just populate from it
{
#region Populating the data sheet's datasheet
//Specifies the Length of the Sequence on the Sequence tab of the data sheet
int Length = _myRegDS.BasicInfo.Length;
TextBlock LengthBlock = new TextBlock();
//ds.SeqTab.Children.Add(LengthBlock);
LengthBlock.VerticalAlignment = VerticalAlignment.Top;
LengthBlock.Text = "Length: " + Length.ToString();
//This is all pulling information from the Reg Data Sheet associated with the part and inserting it in the data sheet
ds.PopulateDataSheet(_myRegDS.Name, 0, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.DescriptionName, 1, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Type, 2, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Promoter.getReg(), 3, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.Availability, 4, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.Usefulness, 5, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Description.assembCompString(), 6, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Description.chassisString(), 7, 1, ds.DataSheet, "datasheet");
//Specific to sequence tab
ds.PopulateDataSheet(_myRegDS.BasicInfo.Sequence, 1, 1, ds.SeqTab, "seq");
ds.PopulateDataSheet(Length.ToString(), 0, 1, ds.SeqTab, "length");
//Specific to AuthorInfo Tab
ds.PopulateDataSheet(_myRegDS.Reference.Author, 0, 1, ds.AuthorInfo, "author");
ds.PopulateDataSheet(_myRegDS.Reference.Group, 1, 1, ds.AuthorInfo, "author");
ds.PopulateDataSheet(_myRegDS.Reference.Date, 2, 1, ds.AuthorInfo, "author");
if (_myRegDS.Type == "rbs")
{
RowDefinition rowDef1 = new RowDefinition();
ds.DataSheet.RowDefinitions.Add(rowDef1);
ds.PopulateDataSheet(_myRegDS.Rbs.FamilyName, 8, 1, ds.DataSheet);
TextBlock RBSFam = new TextBlock();
RBSFam.Text = "Family";
ds.DataSheet.Children.Add(RBSFam);
Grid.SetRow(RBSFam, 8);
}
else if (_myRegDS.Type == "terminator")
{
RowDefinition rowDef1 = new RowDefinition();
RowDefinition rowDef2 = new RowDefinition();
RowDefinition rowDef3 = new RowDefinition();
RowDefinition rowDef4 = new RowDefinition();
ds.DataSheet.RowDefinitions.Add(rowDef1);
ds.DataSheet.RowDefinitions.Add(rowDef2);
ds.DataSheet.RowDefinitions.Add(rowDef3);
ds.DataSheet.RowDefinitions.Add(rowDef4);
TextBlock Direction = new TextBlock();
Direction.Text = "Direction";
Direction.FontSize = 18;
ds.DataSheet.Children.Add(Direction);
Grid.SetRow(Direction, 8);
ds.PopulateDataSheet(_myRegDS.Terminators.Direction, 8, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ForwardEff, 9, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ReversedEff, 10, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ReversedVers, 11, 1, ds.DataSheet);
}
#endregion
#region Populating Publications
Func <String, PubList> _GetPublications =
delegate(String id) { return(new PubList(id)); };
Action <PubList> callback = delegate(PubList result)
{
//_thisRegDS = new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + this.partName.Text);
int m = 0;
if (result.Titles.Count == 0)
{
int Count = result.Titles.Count;
SurfaceListBoxItem NoResults = new SurfaceListBoxItem();
TextBlock Content = new TextBlock();
Content.Text = "No Results Found";
NoResults.Content = Content;
ds.Publictions.Items.Add(NoResults);
}
if (result.Titles.Count > 0)
{
int TotalArticles = result.Titles.Count;
SurfaceListBoxItem ArticleCount = new SurfaceListBoxItem();
TextBlock CountContent = new TextBlock();
CountContent.Text = "Results Found: " + TotalArticles as string;
ArticleCount.Content = CountContent;
ds.Publictions.Items.Add(ArticleCount);
}
foreach (String Titles in result.Titles)
{
//To Test if titles are actually adding
SurfaceListBoxItem item = new SurfaceListBoxItem();
TextBlock PubTitles = new TextBlock();
item.Selected += new RoutedEventHandler(item_Selected);
item.Content = Titles;
PubTitles.Tag = result.Links.ElementAt(m);
//item.Tag = result.Authors.ElementAt(m);
ds.Publictions.Items.Add(item);
RowDefinition rowDef1 = new RowDefinition();
RowDefinition rowDef2 = new RowDefinition();
RowDefinition rowDef3 = new RowDefinition();
RowDefinition rowDef4 = new RowDefinition();
abs = new PubAbstract(PubTitles.Tag as string, result.getAuthors());
item.Tag = "Title: " + item.Content as string + "\r\n" + "\r\n" + "\r\n"
+ "Authors: " + result.Authors.ElementAt(m) as string + "\r\n" + "\r\n"
+ "Abstract:" + "\r\n" + "\r\n"
+ abs.getAbstract() as string;
m += 1;
Console.WriteLine(m);
if (m > 20)
{
break;
}
}
/*foreach (String Titles in result.Titles)
* {
* TextBlock Middle = new TextBlock();
* Middle.Text = Titles;
* //ds.Publications.Children.Add(Middle);
* Grid.SetRow(Middle, m);
* m += 1;
#endregion
* //publications location maybe
* //Creates a list of PubMed source related to the query
*
* }*/
};
_Publist = _progressBarWrapper.execute <String, PubList>(_GetPublications, _myRegDS.BasicInfo.DescriptionName, callback);
#endregion
SurfaceWindow1.addData(sender, ds);
}
else
{
Func <String, RegDataSheet> _getRegDataSheet =
delegate(String pName) { return(new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + pName)); };
Action <RegDataSheet> _getRegDataSheetCallback = delegate(RegDataSheet _regDS)
{
_myRegDS = _regDS;
#region Populating the data sheet's datasheet
//Specifies the Length of the Sequence on the Sequence tab of the data sheet
int Length = _myRegDS.BasicInfo.Length;
TextBlock LengthBlock = new TextBlock();
//ds.SeqTab.Children.Add(LengthBlock);
LengthBlock.VerticalAlignment = VerticalAlignment.Top;
LengthBlock.Text = "Length: " + Length.ToString();
//This is all pulling information from the Reg Data Sheet associated with the part and inserting it in the data sheet
ds.PopulateDataSheet(_myRegDS.Name, 0, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.DescriptionName, 1, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Type, 2, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Promoter.getReg(), 3, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.Availability, 4, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.BasicInfo.Usefulness, 5, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Description.assembCompString(), 6, 1, ds.DataSheet, "datasheet");
ds.PopulateDataSheet(_myRegDS.Description.chassisString(), 7, 1, ds.DataSheet, "datasheet");
//Specific to sequence tab
ds.PopulateDataSheet(_myRegDS.BasicInfo.Sequence, 1, 1, ds.SeqTab, "seq");
ds.PopulateDataSheet(Length.ToString(), 0, 1, ds.SeqTab, "length");
//Specific to AuthorInfo Tab
ds.PopulateDataSheet(_myRegDS.Reference.Author, 0, 1, ds.AuthorInfo, "author");
ds.PopulateDataSheet(_myRegDS.Reference.Group, 1, 1, ds.AuthorInfo, "author");
ds.PopulateDataSheet(_myRegDS.Reference.Date, 2, 1, ds.AuthorInfo, "author");
if (_myRegDS.Type == "rbs")
{
RowDefinition rowDef1 = new RowDefinition();
ds.DataSheet.RowDefinitions.Add(rowDef1);
ds.PopulateDataSheet(_myRegDS.Rbs.FamilyName, 8, 1, ds.DataSheet);
TextBlock RBSFam = new TextBlock();
RBSFam.Text = "Family";
RBSFam.FontSize = 14;
RBSFam.FontWeight = FontWeights.Bold;
RBSFam.VerticalAlignment = VerticalAlignment.Top;
// COME BACK TO THIS LATER
ds.DataSheet.Children.Add(RBSFam);
Grid.SetRow(RBSFam, 8);
}
else if (_myRegDS.Type == "terminator")
{
RowDefinition rowDef1 = new RowDefinition();
RowDefinition rowDef2 = new RowDefinition();
RowDefinition rowDef3 = new RowDefinition();
RowDefinition rowDef4 = new RowDefinition();
ds.DataSheet.RowDefinitions.Add(rowDef1);
ds.DataSheet.RowDefinitions.Add(rowDef2);
ds.DataSheet.RowDefinitions.Add(rowDef3);
ds.DataSheet.RowDefinitions.Add(rowDef4);
TextBlock Direction = new TextBlock();
Direction.Text = "Direction";
Direction.FontSize = 18;
ds.DataSheet.Children.Add(Direction);
Grid.SetRow(Direction, 8);
ds.PopulateDataSheet(_myRegDS.Terminators.Direction, 8, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ForwardEff, 9, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ReversedEff, 10, 1, ds.DataSheet);
ds.PopulateDataSheet(_myRegDS.Terminators.ReversedVers, 11, 1, ds.DataSheet);
}
#endregion
#region Populating Publications
Func <String, PubList> _GetPublications =
delegate(String id) { return(new PubList(id)); };
Action <PubList> callback = delegate(PubList result)
{
//_thisRegDS = new RegDataSheet("http://partsregistry.org/wiki/index.php?title=Part:" + this.partName.Text);
int m = 0;
if (result.Titles.Count == 0)
{
int Count = result.Titles.Count;
SurfaceListBoxItem NoResults = new SurfaceListBoxItem();
TextBlock Content = new TextBlock();
Content.Text = "No Results Found";
NoResults.Content = Content;
ds.Publictions.Items.Add(NoResults);
}
if (result.Titles.Count > 0)
{
int TotalArticles = result.Titles.Count;
SurfaceListBoxItem ArticleCount = new SurfaceListBoxItem();
TextBlock CountContent = new TextBlock();
CountContent.Text = "Results Found: " + TotalArticles as string;
ArticleCount.Content = CountContent;
ds.Publictions.Items.Add(ArticleCount);
}
foreach (String Titles in result.Titles)
{
//To Test if titles are actually adding
SurfaceListBoxItem item = new SurfaceListBoxItem();
TextBlock PubTitles = new TextBlock();
item.Selected += new RoutedEventHandler(item_Selected);
item.Content = Titles;
PubTitles.Tag = result.Links.ElementAt(m);
//item.Tag = result.Authors.ElementAt(m);
ds.Publictions.Items.Add(item);
RowDefinition rowDef1 = new RowDefinition();
RowDefinition rowDef2 = new RowDefinition();
RowDefinition rowDef3 = new RowDefinition();
RowDefinition rowDef4 = new RowDefinition();
abs = new PubAbstract(PubTitles.Tag as string, result.getAuthors());
item.Tag = "Title: " + item.Content as string + "\r\n" + "\r\n" + "\r\n"
+ "Authors: " + result.Authors.ElementAt(m) as string + "\r\n" + "\r\n"
+ "Abstract:" + "\r\n" + "\r\n"
+ abs.getAbstract() as string;
m += 1;
Console.WriteLine(m);
if (m > 20)
{
break;
}
}
/*foreach (String Titles in result.Titles)
* {
* TextBlock Middle = new TextBlock();
* Middle.Text = Titles;
* //ds.Publications.Children.Add(Middle);
* Grid.SetRow(Middle, m);
* m += 1;
#endregion
* //publications location maybe
* //Creates a list of PubMed source related to the query
*
* }*/
};
_Publist = _progressBarWrapper.execute <String, PubList>(_GetPublications, _myRegDS.BasicInfo.DescriptionName, callback);
#endregion
SurfaceWindow1.addData(sender, ds);
};
_dataSheet = _progressBarWrapper.execute <String, RegDataSheet>(_getRegDataSheet, partName.Text, _getRegDataSheetCallback);
}
}
/// <summary>
/// When the Test Selected Primers button is pressed, the tests are called and
/// the displays are updated accordingly.
/// </summary>
/// <param name="sender"></param>
/// <param name="e"></param>
private void testRunner_Click(object sender, RoutedEventArgs e)
{
_primerTest = _progressBarWrapper.execute <List <double> >(_getTestResults, _getTestResultsCallback);
Console.WriteLine(alignments);
Console.WriteLine("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
#region dumb
// try
// {
// // at1 is for all of the tests for the LEFT PRIMER
// alignmentTests at1 = new alignmentTests(_leftSeq);
// //the following is for HAIRPIN RUN only!!
// double worstCaseHP1 = at1.hairpinRun();
// _leftGibbsFree = calcDeltaG(_leftSeq);
// hNumF.Text = worstCaseHP1.ToString();
// if (worstCaseHP1 < _leftGibbsFree)
// {
// hCheckF.IsChecked = true;
// }
// else
// {
// hCheckF.IsChecked = false;
// }
// //the following is for SELF DIMER only!!
// double worstCaseSD1 = at1.selfDimerRun();
// sNumF.Text = worstCaseSD1.ToString();
// if (worstCaseSD1 < _leftGibbsFree)
// {
// sCheckF.IsChecked = true;
// }
// else
// {
// sCheckF.IsChecked = false;
// }
// //the following is for HETERODIMER only!!
// double worstCaseHD1 = at1.heteroDimerRun(_rightSeq);
// _rightGibbsFree = calcDeltaG(_rightSeq);
// tNumF.Text = worstCaseHD1.ToString();
// if (worstCaseHD1 < _rightGibbsFree)
// {
// tCheckF.IsChecked = true;
// }
// else
// {
// tCheckF.IsChecked = false;
// }
// // at2 is for all of the tests for the RIGHT PRIMER
// alignmentTests at2 = new alignmentTests(_rightSeq);
// //the following is for HAIRPIN RUN only!!
// double worstCaseHP2 = at2.hairpinRun();
// hNumR.Text = worstCaseHP2.ToString();
// if (worstCaseHP2 < _leftGibbsFree)
// {
// hCheckR.IsChecked = true;
// }
// else
// {
// hCheckR.IsChecked = false;
// }
// //the following is for SELF DIMER only!!
// double worstCaseSD2 = at2.selfDimerRun();
// sNumR.Text = worstCaseSD2.ToString();
// if (worstCaseSD2 < _rightGibbsFree)
// {
// sCheckR.IsChecked = true;
// }
// else
// {
// sCheckR.IsChecked = false;
// }
// //the following is for HETERODIMER only!!
// double worstCaseHD2 = at2.heteroDimerRun(_leftSeq);
// tNumR.Text = worstCaseHD2.ToString();
// if (worstCaseHD2 < _rightGibbsFree)
// {
// tCheckR.IsChecked = true;
// }
// else
// {
// tCheckR.IsChecked = false;
// }
// }
// catch (Exception exc) { Console.WriteLine(exc); }
#endregion
}
//Search using string entered into searchBar
private void searchByString(object sender, KeyEventArgs e)
{
if (e.Key == Key.Return)
{
//if ((Boolean)searchInAll.IsChecked) filtersPanel.Children.Clear();
L0_resultsSV.Items.Clear();
L0_resultsSV.Height = 920;
if (_currentSearch != null)
{
_currentSearch.Abort();
}
ProgressIndicator.Visibility = Visibility.Collapsed;
////Search has been run, so reset indexes to prevent restoring
//storedFilterIndex = -1;
//storedTypeIndex = -1;
//Creates search and filters through returned data sheets according to whether searchInAll or searchInType is checked
Func <String, Search> _searchByString =
delegate(String query) { return(new Search(query)); };
Action <Search> callback = delegate(Search result)
{
foreach (RegDataSheet regDS in result.RegDS)
{
String typeConverted = convertType_RDSToMCP(regDS.Type);
String category = "";
if (typeConverted == "prom")
{
category = regDS.Promoter.getReg();
}
if (typeConverted == "rbs")
{
category = regDS.Rbs.FamilyName;
}
if (typeConverted == "cds")
{
category = regDS.Gene.GeneType;
}
if (typeConverted == "term")
{
category = regDS.Terminators.Direction;
}
//If searchInAll is checked, don't filter. If searchInType is selected, filter.
if (_partTypeSelected == "all")
{
partFromRegDS(regDS, category);
}
else
{
if (typeConverted == _partTypeSelected)
{
partFromRegDS(regDS, category);
//if (typeConverted == "prom") { partFromRegDS(regDS, regDS.Promoter.getReg()); }
//if (typeConverted == "rbs") { partFromRegDS(regDS, regDS.Rbs.FamilyName); }
//if (typeConverted == "cds") { partFromRegDS(regDS, "CDS"); }
//if (typeConverted == "term") { partFromRegDS(regDS, regDS.Terminators.Direction); }
}
}
}
};
_currentSearch = _progressBarWrapper.execute <String, Search>(_searchByString, searchBar.Text, callback);
#region Non-delegate search
//Search s = new Search(searchBar.Text);
//foreach (RegDataSheet regDS in s.RegDS)
//{
// String typeConverted = convertType_RDSToMCP(regDS.Type);
// if (typeConverted == _partTypeSelected)
// {
// if (typeConverted == "prom") { Part p = partFromRegDS(regDS, regDS.Promoter.getReg()); }
// if (typeConverted == "rbs") { Part p = partFromRegDS(regDS, regDS.Rbs.FamilyName); }
// if (typeConverted == "cds") { Part p = partFromRegDS(regDS, "CDS"); }
// if (typeConverted == "term") { Part p = partFromRegDS(regDS, regDS.Terminators.Direction); }
// }
//}
#endregion
}
}
