public void loadParametersTest1()
{
string testParameterFile =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml";
FileInputsInfo fileInputs = new FileInputsInfo();
fileInputs.ParameterFilePath = testParameterFile;
ViewAndAnnotateViewModel viewModel = new ViewAndAnnotateViewModel(fileInputs);
Assert.IsNotNull(viewModel.Workflow.WorkflowParameters);
Assert.AreEqual(2,((TargetedWorkflowParameters)(viewModel.Workflow.WorkflowParameters)).MSPeakDetectorPeakBR);
}
public ViewAndAnnotateView(Project project = null)
{
InitializeComponent();
if (project == null)
{
project = new Project();
}
ViewModel = new ViewAndAnnotateViewModel(project.ResultRepository, project.FileInputs);
LoadSettings();
ViewModel.AllDataLoadedAndReadyEvent += new AllDataLoadedAndReadyEventHandler(ViewModel_AllDataLoadedAndReadyEvent);
DataContext = ViewModel;
ViewModel.Run = project.Run;
}
public void executeWorkflowTest1()
{
string testDatafile =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\Yellow_C13_070_23Mar10_Griffin_10-01-28.raw";
string testResultFile =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\Results\Yellow_C13_070_23Mar10_Griffin_10-01-28_temp_results.txt";
string testParameterFile =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml";
ViewAndAnnotateViewModel viewModel = new ViewAndAnnotateViewModel();
viewModel.FileInputs.ParameterFilePath = testParameterFile;
viewModel.FileInputs.TargetsFilePath = testResultFile;
viewModel.FileInputs.DatasetPath = testDatafile;
viewModel.LoadRun(testDatafile);
//need to do this to ensure that _peaks file loads completely. Or else, no chromData error occurs
Thread.Sleep(5000);
viewModel.LoadResults(testResultFile);
viewModel.CurrentResult = viewModel.Results.First(p => p.TargetID == 5555);
viewModel.ExecuteWorkflow();
Assert.IsNotNull(viewModel.Workflow.MassSpectrumXYData);
Assert.IsNotNull(viewModel.Workflow.ChromatogramXYData);
Assert.AreEqual(3728, viewModel.CurrentLcScan);
Console.WriteLine("CurrentScanSet= " + viewModel.CurrentLcScan);
var result =(SipperLcmsTargetedResult)viewModel.Workflow.Result;
Assert.IsTrue(result.ChromCorrelationMedian > 0.9);
viewModel.NavigateToNextMs1MassSpectrum();
Assert.AreEqual(3739, viewModel.CurrentLcScan);
Console.WriteLine("After manual navigating... CurrentScanSet= " + viewModel.CurrentLcScan);
viewModel.NavigateToNextMs1MassSpectrum();
Assert.AreEqual(3750, viewModel.CurrentLcScan);
Console.WriteLine("After manual navigating... CurrentScanSet= " + viewModel.CurrentLcScan);
}
public void loadResultsTest()
{
string testParameterFile =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml";
string testResultFile =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\Yellow_C13_070_23Mar10_Griffin_10-01-28_testing_results.txt";
FileInputsInfo fileInputs = new FileInputsInfo();
fileInputs.ParameterFilePath = testParameterFile;
fileInputs.TargetsFilePath = testResultFile;
ViewAndAnnotateViewModel viewModel = new ViewAndAnnotateViewModel(fileInputs);
viewModel.LoadResults(testResultFile);
Assert.IsNotEmpty(viewModel.Results);
}
