public void createFileLinkageSingleXMLFile_Test1()
{
AutoprocessorViewModel viewModel = new AutoprocessorViewModel();
string testWorkflowFile = FileRefs.TestFilePath + "\\" + "SipperTargetedWorkflowParameters1.XML";
viewModel.FileInputs.CreateFileLinkage(testWorkflowFile);
Assert.IsTrue(viewModel.FileInputs.ParameterFilePath == testWorkflowFile);
}
public void createFileLinkageSingleTextFile_Test1()
{
AutoprocessorViewModel viewModel = new AutoprocessorViewModel();
string testTargetFile1 = FileRefs.TestFilePath + "\\" + "Yellow_C13_070_23Mar10_Griffin_10-01-28_LCMSFeatures.txt";
viewModel.FileInputs.CreateFileLinkage(testTargetFile1);
Assert.IsTrue(viewModel.FileInputs.TargetsFilePath == testTargetFile1);
}
public void create_Run__Test1()
{
AutoprocessorViewModel viewModel = new AutoprocessorViewModel();
string testFile =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\Yellow_C13_070_23Mar10_Griffin_10-01-28.raw";
viewModel.FileInputs.CreateFileLinkage(testFile);
Assert.IsTrue(viewModel.FileInputs.DatasetPath == testFile);
}
public AutoprocessorWindow(Project sipperProject = null)
{
InitializeComponent();
if (sipperProject==null)
{
sipperProject = new Project();
}
ViewModel = new AutoprocessorViewModel(sipperProject.ResultRepository, sipperProject.FileInputs);
ViewModel.CurrentResultUpdated += ViewModel_CurrentResultUpdated;
DataContext = ViewModel;
}
public void createFileLinkageMultiple_XMLFile_Test1()
{
AutoprocessorViewModel viewModel = new AutoprocessorViewModel();
string testWorkflowFile = FileRefs.TestFilePath + "\\" + "SipperTargetedWorkflowParameters1.XML";
string testWorkflowFile2 = FileRefs.TestFilePath + "\\" + "SipperTargetedWorkflowParameters1.xml";
string testTargetFile1 = FileRefs.TestFilePath + "\\" + "Yellow_C13_070_23Mar10_Griffin_10-01-28_LCMSFeatures.txt";
List<string> inputFiles = new List<string>();
inputFiles.Add(testWorkflowFile);
inputFiles.Add(testWorkflowFile2);
inputFiles.Add(testTargetFile1);
viewModel.FileInputs.CreateFileLinkages(inputFiles);
Assert.IsTrue(viewModel.FileInputs.ParameterFilePath == testWorkflowFile);
Assert.IsTrue(viewModel.FileInputs.TargetsFilePath==testTargetFile1);
}
public void process_test1()
{
AutoprocessorViewModel viewModel=new AutoprocessorViewModel();
// Instrument data file
string testRawDataFile =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\Yellow_C13_070_23Mar10_Griffin_10-01-28.raw";
string expectedResultsFile = Path.GetDirectoryName(testRawDataFile) + "\\Results\\" +
RunUtilities.GetDatasetName(testRawDataFile) + "_results.txt";
if (File.Exists(expectedResultsFile)) File.Delete(expectedResultsFile);
// Parameter file
string testWorkflowFile =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\SipperTargetedWorkflowParameters1.xml";
// Targets file
string testTargetFile1 =
@"\\protoapps\UserData\Slysz\Standard_Testing\Targeted_FeatureFinding\SIPPER_standard_testing\Yellow_C13_070_23Mar10_Griffin_10-01-28_testing_results.txt";
viewModel.FileInputs.CreateFileLinkage(testRawDataFile);
viewModel.FileInputs.CreateFileLinkage(testTargetFile1);
viewModel.FileInputs.CreateFileLinkage(testWorkflowFile);
viewModel.Execute();
Thread.Sleep(12000); // the viewModel has a background worker and we need to pause to let the processing complete in the background
Assert.That(File.Exists(expectedResultsFile));
SipperResultFromTextImporter importer = new SipperResultFromTextImporter(expectedResultsFile);
var resultRepo = importer.Import();
Assert.AreEqual(19, resultRepo.Results.Count);
var testResult = (DeconTools.Workflows.Backend.Results.SipperLcmsFeatureTargetedResultDTO)resultRepo.Results[1];
Assert.AreEqual("Yellow_C13_070_23Mar10_Griffin_10-01-28", testResult.DatasetName);
Assert.AreEqual(7585, testResult.TargetID);
Assert.AreEqual("C63H109N17O21", testResult.EmpiricalFormula);
Assert.AreEqual(11805, testResult.ScanLC);
}
