Ejemplos de SAUtils.InputFileParsers.ClinVar VariantAligner en C# (CSharp)

Ejemplo n.º 1

 // constructor
 public ClinVarXmlReader(FileInfo clinVarXmlFileInfo, ISequenceProvider sequenceProvider)
 {
     _sequenceProvider   = sequenceProvider;
     _aligner            = new VariantAligner(_sequenceProvider.Sequence);
     _clinVarXmlFileInfo = clinVarXmlFileInfo;
     _refChromDict       = sequenceProvider.RefNameToChromosome;
 }

Ejemplo n.º 2

 // constructor
 public ClinVarXmlReader(FileInfo clinVarXmlFileInfo, CompressedSequenceReader reader,
                         ICompressedSequence compressedSequence)
 {
     _dataFileManager    = new DataFileManager(reader, compressedSequence);
     _compressedSequence = compressedSequence;
     _aligner            = new VariantAligner(compressedSequence);
     _clinVarXmlFileInfo = clinVarXmlFileInfo;
 }