public void SetUp()
{
alpha = DnaAlphabet.Instance();
symbols = new SymbolArray(alpha, "actgactg");
this.indexer = new IndexerDirect(2);
accessor = new AccessorLinear(indexer, 4, symbols);
}
public void SetUp()
{
alpha = DnaAlphabet.Instance();
symbols = new SymbolArray(alpha, "tatgacgt");
this.indexer = new IndexerDirect(2);
accessor = new AccessorTransparent(indexer, 4, symbols);
}
public void SetUp()
{
alpha = DnaAlphabet.Instance();
symbols = new SymbolArray(alpha, "actgactg");
indexer = new IndexerDirect(2);
indexerReverse = new IndexerReverse(2,symbols.Length);
accessor = new AccessorCircular(this.indexer, 4, symbols);
}
public void TestReverseSymbolAt()
{
this.indexer = new IndexerReverse(2, symbols.Length);
accessor = new AccessorLinear(indexer, 4, symbols);
Assert.AreEqual(alpha['-'], accessor.SymbolAt(-1));
Assert.AreEqual(alpha['c'], accessor.SymbolAt(0));
Assert.AreEqual(alpha['a'], accessor.SymbolAt(1));
Assert.AreEqual(alpha['g'], accessor.SymbolAt(2));
Assert.AreEqual(alpha['t'], accessor.SymbolAt(3));
Assert.AreEqual(alpha['-'], accessor.SymbolAt(4));
}