/// <summary>
/// Sets relevant regions for a transcript
/// </summary>
/// <param name="transcript"></param>
public static void SetRegions(Transcript transcript)
{
transcript.Introns = transcript.CreateIntrons();
transcript.UTRs = transcript.CreateUTRs();
var updown = transcript.CreateUpDown(transcript.Gene.Chromosome);
transcript.Upstream = updown.OfType <Upstream>().FirstOrDefault();
transcript.Downstream = updown.OfType <Downstream>().FirstOrDefault();
}
