public BinarySpectrum(double startRt, double endRt, XYBinaryData xyData)
: this(startRt, endRt, xyData.XValues as BinaryData, xyData.YValues as BinaryData)
{
}
private IXYData ExtractTicByManuallyLookingAtEachSpectrumInTheFile(TimeUnit timeUnits)
{
if (ticCache.IsInCache())
{
return ticCache.Read();
}
else
{
BinaryData xVals = new BinaryData();
BinaryData yVals = new BinaryData();
pwiz.CLI.msdata.SpectrumList spectrumList = run.spectrumList;
int timePoints = spectrumList.size();
for (int i = 0; i < timePoints; i++)
{
pwiz.CLI.msdata.Spectrum s = spectrumList.spectrum(i);
Scan scan = null;
if (s.scanList.scans.Count > 0)
{
scan = s.scanList.scans[0];
}
CVParam param;
param = s.cvParam(pwiz.CLI.CVID.MS_ms_level);
int msLevel = !param.empty() ? (int)param.value : 0;
if (msLevel <= 1)
{
param = scan != null ? scan.cvParam(pwiz.CLI.CVID.MS_scan_start_time) : new CVParam();
double scanTime = !param.empty() ? (double)param.value : 0;
// TODO: Duplicated with CalculateRT, reuse RtToTimePointConverter.
if (timeUnits == TimeUnit.Seconds)
{
xVals.Add(scanTime / 60);
}
param = s.cvParam(pwiz.CLI.CVID.MS_total_ion_current);
yVals.Add(!param.empty() ? (double)param.value : 0);
}
}
IXYData tic = new XYBinaryData(xVals, yVals);
ticCache.Set(tic);
return tic;
}
}
public BinarySpectrum(double rt, XYBinaryData xyData)
: this(rt, rt, xyData)
{
}