public static AminoAcid GetAminoAcid(char c)
{
if (!AminoAcids.IsStandardAminoAcid(c))
{
return(null);
}
return(AminoAcidList[c]);
}
static public bool CheckPeptideList(List <string> peptides, int length, out List <string> warnings, out List <string> errors)
{
warnings = new List <string>();
errors = new List <string>();
bool ret = true;
try
{
foreach (string p in peptides)
{
if (Regex.Matches(p, @"[a-zA-Z]").Count < p.Length)
{
errors.Add("Invalid characters in " + p);
}
else
{
if (p.Length < length)
{
warnings.Add("Length inconsistency in " + p);
}
foreach (char c in p.Substring(0, Math.Min(p.Length, length)))
{
if (!AminoAcids.IsStandardAminoAcid(c))
{
warnings.Add("Non-standard amino acid in " + p);
break;
}
}
}
}
return(ret);
}
catch (Exception exc)
{
errors.Add("Unhandled exception: " + exc.Message);
return(false);
}
}