public static string GetCutSequence(int SeqStart, int SeqEnd, int Strand, int Chr, string OrganismAlias)
{
return
(GetCleanFasta(
HTTP_Mgt.HttpGet(
KEGGREST_url_mgt.GetCutSequenceURL(SeqStart, SeqEnd, Strand, Chr, OrganismAlias))));
}
public static List <GeneInfo> GetGeneInfoByKEGGGenes(List <string> Organisms, string GeneName)
{
string AllInfo = HTTP_Mgt.HttpGet(KEGGREST_url_mgt.GetGenesInfoURL(Organisms, GeneName));
Console.WriteLine(AllInfo);
return(GetGeneInfoFromREST(AllInfo));
}
public static List <GeneInfo> GetGeneInfoByKEGGGenes(string Organizm, List <string> KEGGGenes)
{
string AllInfo = HTTP_Mgt.HttpGet(KEGGREST_url_mgt.GetGenesInfoURL(Organizm, KEGGGenes));
Console.WriteLine(AllInfo);
return(GetGeneInfoFromREST(AllInfo));
}
public static Operon FindOperon(string OrganizmName, string OrganizmAlias, string GeneName)
{
string URL = @"http://operons.ibt.unam.mx/OperonPredictor/svlOperons?sTypeOperon=g&sOrganismDef=" + OrganizmName +
"&iOption=1&sOrganism=" + OrganizmAlias + "&sTypeGeneSpecific=specific";
string Params = @"sGeneName=" + GeneName + "&Search=Search+a+specific+gene";
string Response = HTTP_Mgt.HTTPPost(URL, Params);
//string[] FileContent = File.ReadAllLines(@"C:\deleteme\httppost.txt");
//string Response = string.Join("", FileContent);
return(ParseOperon(Response));
}
public static List <GeneInfo> GetGeneInfoByKEGGGenes(List <string> Organisms, List <string> GeneNames)
{
string AllInfo = HTTP_Mgt.HttpGet(KEGGREST_url_mgt.GetGenesInfoURL(Organisms, GeneNames));
return(GetGeneInfoFromREST(AllInfo));
}
public static List <string> GetKEGGGenesIDs(string Organizm, List <string> ECList)
{
string Reply = HTTP_Mgt.HttpGet(KEGGREST_url_mgt.GetOrgPathwayGenesURL(Organizm, ECList));
return(SplitREST(Reply));
}
public static List <string> GetNCBIGenesIDs(string Organizm, List <string> KEGGGenesIds)
{
string Reply = HTTP_Mgt.HttpGet(KEGGREST_url_mgt.GetKEGGtoNCBIconvURL(Organizm, KEGGGenesIds));
return(SplitREST(Reply));
}
public static string GetOrthologList(string OrthologNo)
{
return(HTTP_Mgt.HttpGet(KEGGREST_url_mgt.GetOrthologListURL(OrthologNo)));
}
