///<summary>Called after file is downloaded. Throws exceptions. It is assumed that this is called from a worker thread. Progress delegate will be called every 100th iteration to inform thread of current progress. Quit flag can be set at any time in order to quit importing prematurely.</summary>
public static void ImportLoinc(string tempFileName, ProgressArgs progress, ref bool quit)
{
if (tempFileName == null)
{
return;
}
HashSet <string> codeHash = new HashSet <string>(Loincs.GetAllCodes());
string[] lines = File.ReadAllLines(tempFileName);
string[] arrayLoinc;
Loinc loinc = new Loinc();
for (int i = 0; i < lines.Length; i++) //each loop should read exactly one line of code. and each line of code should be a unique code
{
if (quit)
{
return;
}
if (i % 100 == 0)
{
progress(i + 1, lines.Length);
}
arrayLoinc = lines[i].Split('\t');
if (codeHash.Contains(arrayLoinc[0])) //code already exists
{
continue;
}
loinc.LoincCode = arrayLoinc[0];
loinc.Component = arrayLoinc[1];
loinc.PropertyObserved = arrayLoinc[2];
loinc.TimeAspct = arrayLoinc[3];
loinc.SystemMeasured = arrayLoinc[4];
loinc.ScaleType = arrayLoinc[5];
loinc.MethodType = arrayLoinc[6];
loinc.StatusOfCode = arrayLoinc[7];
loinc.NameShort = arrayLoinc[8];
loinc.ClassType = arrayLoinc[9];
loinc.UnitsRequired = arrayLoinc[10] == "Y";
loinc.OrderObs = arrayLoinc[11];
loinc.HL7FieldSubfieldID = arrayLoinc[12];
loinc.ExternalCopyrightNotice = arrayLoinc[13];
loinc.NameLongCommon = arrayLoinc[14];
loinc.UnitsUCUM = arrayLoinc[15];
loinc.RankCommonTests = PIn.Int(arrayLoinc[16]);
loinc.RankCommonOrders = PIn.Int(arrayLoinc[17]);
Loincs.Insert(loinc);
}
}
///<summary>Called after file is downloaded. Throws exceptions. It is assumed that this is called from a worker thread. Progress delegate will be called every 100th iteration to inform thread of current progress. Quit flag can be set at any time in order to quit importing prematurely.</summary>
public static void ImportLoinc(string tempFileName, ProgressArgs progress, ref bool quit, ref int numCodesImported, ref int numCodesUpdated,
bool updateExisting)
{
if (tempFileName == null)
{
return;
}
Dictionary <string, Loinc> dictLoincs = Loincs.GetAll().ToDictionary(x => x.LoincCode, x => x);
string[] lines = File.ReadAllLines(tempFileName);
string[] arrayLoinc;
Loinc oldLoinc = new Loinc();
Loinc newLoinc = new Loinc();
for (int i = 0; i < lines.Length; i++) //each loop should read exactly one line of code. and each line of code should be a unique code
{
if (quit)
{
return;
}
if (i % 100 == 0)
{
progress(i + 1, lines.Length);
}
arrayLoinc = lines[i].Split('\t');
newLoinc.LoincCode = arrayLoinc[0];
newLoinc.Component = arrayLoinc[1];
newLoinc.PropertyObserved = arrayLoinc[2];
newLoinc.TimeAspct = arrayLoinc[3];
newLoinc.SystemMeasured = arrayLoinc[4];
newLoinc.ScaleType = arrayLoinc[5];
newLoinc.MethodType = arrayLoinc[6];
newLoinc.StatusOfCode = arrayLoinc[7];
newLoinc.NameShort = arrayLoinc[8];
newLoinc.ClassType = arrayLoinc[9];
newLoinc.UnitsRequired = arrayLoinc[10] == "Y";
newLoinc.OrderObs = arrayLoinc[11];
newLoinc.HL7FieldSubfieldID = arrayLoinc[12];
newLoinc.ExternalCopyrightNotice = arrayLoinc[13];
newLoinc.NameLongCommon = arrayLoinc[14];
newLoinc.UnitsUCUM = arrayLoinc[15];
newLoinc.RankCommonTests = PIn.Int(arrayLoinc[16]);
newLoinc.RankCommonOrders = PIn.Int(arrayLoinc[17]);
if (dictLoincs.ContainsKey(arrayLoinc[0])) //code already exists; arrayLoinc[0]==Loinc Code
{
oldLoinc = dictLoincs[arrayLoinc[0]];
if (updateExisting &&
(oldLoinc.LoincCode != arrayLoinc[0] ||
oldLoinc.Component != arrayLoinc[1] ||
oldLoinc.PropertyObserved != arrayLoinc[2] ||
oldLoinc.TimeAspct != arrayLoinc[3] ||
oldLoinc.SystemMeasured != arrayLoinc[4] ||
oldLoinc.ScaleType != arrayLoinc[5] ||
oldLoinc.MethodType != arrayLoinc[6] ||
oldLoinc.StatusOfCode != arrayLoinc[7] ||
oldLoinc.NameShort != arrayLoinc[8] ||
oldLoinc.ClassType != arrayLoinc[9] ||
oldLoinc.UnitsRequired != (arrayLoinc[10] == "Y") ||
oldLoinc.OrderObs != arrayLoinc[11] ||
oldLoinc.HL7FieldSubfieldID != arrayLoinc[12] ||
oldLoinc.ExternalCopyrightNotice != arrayLoinc[13] ||
oldLoinc.NameLongCommon != arrayLoinc[14] ||
oldLoinc.UnitsUCUM != arrayLoinc[15] ||
oldLoinc.RankCommonTests != PIn.Int(arrayLoinc[16]) ||
oldLoinc.RankCommonOrders != PIn.Int(arrayLoinc[17])))
{
Loincs.Update(newLoinc);
numCodesUpdated++;
}
continue;
}
Loincs.Insert(newLoinc);
numCodesImported++;
}
}
