public virtual List <string> RunData()
{
List <string> data = new List <string>();
string subjectGroup = (run.Subject.SubjectGroup != null) ? run.Subject.SubjectGroup.ToString() : "";
initializeCounters();
initializeRunEventsInRange();
calculateCounters(runEventsInRange);
data.Add(run.Trial.Session.BehavioralTest.Project.ToString());
data.Add(run.Subject.ToString());
data.Add(subjectGroup);
data.Add(run.Subject.Strain);
data.Add(run.Subject.Sex);
data.Add(run.Trial.ToString());
data.Add(run.Trial.Duration.ToString());
data.Add(run.TmRun.ToString("dd/MM/yyyy"));
data.Add(run.TmRun.ToString("HH:mm:ss"));
data.Add(runEventsInRange.Count.ToString());
foreach (var behaviorTotal in stateBehaviorTotalDuration)
{
data.Add(behaviorTotal.Value.ToString("F3"));
}
foreach (var behaviorCount in behaviorFrequency)
{
data.Add(behaviorCount.Value.ToString());
}
foreach (var behaviorTime in stateBehaviorLatency)
{
double?latency = stateBehaviorLatency[behaviorTime.Key];
if (latency == null)
{
latency = exportSettings.ExportEnd;
}
data.Add(latency.Value.ToString("F3"));
}
if (exportSettings.UseTimeBins)
{
ExportTimeBin exportTimeBin = new ExportTimeBin(run, exportSettings, stateRunEventsInRange);
List <TimeBin> timeBins = exportTimeBin.calculateTimeBins();
data.AddRange(exportTimeBin.data());
}
return(data);
}
public virtual List <string> Headers()
{
Trial trial = run.Trial;
List <string> headers = new List <string>();
BehavioralTest behavioralTest = trial.Session.BehavioralTest;
headers.Add("Project");
headers.Add("SubjectID");
headers.Add("SubjectGroup");
headers.Add("Strain");
headers.Add("Sex");
headers.Add("TrialName");
headers.Add("TrialDuration");
headers.Add("DateRun");
headers.Add("TimeRun");
headers.Add("Number of Events");
// Duration
foreach (Behavior behavior in behavioralTest.GetBehaviors())
{
if (behavior.Type == Behavior.BehaviorType.State)
{
headers.Add(behavior.Name + " Duration");
}
}
// Frequency
foreach (Behavior behavior in behavioralTest.GetBehaviors())
{
headers.Add(behavior.Name + " Frequency");
}
// Latency
foreach (Behavior behavior in behavioralTest.GetBehaviors())
{
if (behavior.Type == Behavior.BehaviorType.State)
{
headers.Add(behavior.Name + " Latency");
}
}
if (exportSettings.UseTimeBins)
{
if (trial.Runs.Count > 0)
{
ExportTimeBin exportTimeBin = new ExportTimeBin(trial.Runs[0], exportSettings, stateRunEventsInRange);
headers.AddRange(exportTimeBin.headers());
}
}
return(headers);
}
public virtual List<string> Headers()
{
Trial trial = run.Trial;
List<string> headers = new List<string>();
BehavioralTest behavioralTest = trial.Session.BehavioralTest;
headers.Add("Project");
headers.Add("SubjectID");
headers.Add("SubjectGroup");
headers.Add("Strain");
headers.Add("Sex");
headers.Add("TrialName");
headers.Add("TrialDuration");
headers.Add("DateRun");
headers.Add("TimeRun");
headers.Add("Number of Events");
// Duration
foreach (Behavior behavior in behavioralTest.GetBehaviors())
{
if (behavior.Type == Behavior.BehaviorType.State)
{
headers.Add(behavior.Name + " Duration");
}
}
// Frequency
foreach (Behavior behavior in behavioralTest.GetBehaviors())
{
headers.Add(behavior.Name + " Frequency");
}
// Latency
foreach (Behavior behavior in behavioralTest.GetBehaviors())
{
if (behavior.Type == Behavior.BehaviorType.State)
{
headers.Add(behavior.Name + " Latency");
}
}
if (exportSettings.UseTimeBins)
{
if (trial.Runs.Count > 0)
{
ExportTimeBin exportTimeBin = new ExportTimeBin(trial.Runs[0], exportSettings, stateRunEventsInRange);
headers.AddRange(exportTimeBin.headers());
}
}
return headers;
}
public virtual List<string> RunData()
{
List<string> data = new List<string>();
string subjectGroup = (run.Subject.SubjectGroup != null) ? run.Subject.SubjectGroup.ToString() : "";
initializeCounters();
initializeRunEventsInRange();
calculateCounters(runEventsInRange);
data.Add(run.Trial.Session.BehavioralTest.Project.ToString());
data.Add(run.Subject.ToString());
data.Add(subjectGroup);
data.Add(run.Subject.Strain);
data.Add(run.Subject.Sex);
data.Add(run.Trial.ToString());
data.Add(run.Trial.Duration.ToString());
data.Add(run.TmRun.ToString("dd/MM/yyyy"));
data.Add(run.TmRun.ToString("HH:mm:ss"));
data.Add(runEventsInRange.Count.ToString());
foreach (var behaviorTotal in stateBehaviorTotalDuration)
{
data.Add(behaviorTotal.Value.ToString("F3"));
}
foreach (var behaviorCount in behaviorFrequency)
{
data.Add(behaviorCount.Value.ToString());
}
foreach (var behaviorTime in stateBehaviorLatency)
{
double? latency = stateBehaviorLatency[behaviorTime.Key];
if (latency == null)
{
latency = exportSettings.ExportEnd;
}
data.Add(latency.Value.ToString("F3"));
}
if (exportSettings.UseTimeBins)
{
ExportTimeBin exportTimeBin = new ExportTimeBin(run, exportSettings, stateRunEventsInRange);
List<TimeBin> timeBins = exportTimeBin.calculateTimeBins();
data.AddRange(exportTimeBin.data());
}
return data;
}
public void testTimeBins()
{
Trial trial = Fixtures.Fixtures.fstLightTrial;
Run run = Fixtures.Fixtures.createLightFstRun(trial);
ExportTimeBin exportTimeBin = new ExportTimeBin(run, new ExportSettings(trial, 5), run.SortedStateRunEvents);
List<TimeBin> timeBins = exportTimeBin.calculateTimeBins();
// initialization
Assert.AreEqual(3, timeBins.Count, "TimeBins Count");
Assert.AreEqual(5000, timeBins[1].start);
Assert.AreEqual(10000, timeBins[1].end);
// calculation
Assert.AreEqual(3800, timeBins[0].stateBehaviorTotalDuration[Fixtures.Fixtures.FstSwimming]);
// export runData
List<string> headers = exportTimeBin.headers();
Assert.AreEqual(12, headers.Count);
Assert.AreEqual("Climbing 0-5", headers[0]);
Assert.AreEqual("Climbing 5-10", headers[1]);
Assert.AreEqual("Swimming 0-5", headers[3]);
Assert.AreEqual("Diving 10-15", headers[11]);
// export data
List<string> data = exportTimeBin.data();
Assert.AreEqual(12, data.Count);
Assert.AreEqual((1.2).ToString("F3"), data[0]);
Assert.AreEqual((0.0).ToString("F3"), data[1]);
Assert.AreEqual((3.8).ToString("F3"), data[3]);
Assert.AreEqual((0.0).ToString("F3"), data[11]);
//Exporter exporter = new Exporter(new ExportSettings(5));
//exporter.export(run);
run.RunEvents.Clear();
}