public static ComponentBase ComponentFactory(string componentType)
{
switch(componentType)
{
case("Flagella"):
{
FlagellaComponent component= new FlagellaComponent();
component.componentType = componentType;
return component;
}
case("Receptor"):
{
ReceptorComponent component = new ReceptorComponent();
component.componentType = componentType;
return component;
}
case ("Cell Body"):
{
CellBodyComponent component = new CellBodyComponent();
component.componentType = componentType;
return component;
}
}
return null;
}
/// <summary>
/// Constructor for creating a cell instance with a cell definition
/// </summary>
/// <param name="cellDefinition">
/// A <see cref="CellDefinition"/>
/// </param>
public CellInstance(CellDefinition cellDefinition)
{
this.cellInstanceDefinition = cellDefinition;
SBML.Model model = cellDefinition.getModel();
if (model != null)
{
this.species = cellDefinition.getModel().listOfSpecies;
}
// Initialize the specials Dictionary
this.speciesVariables = new Dictionary<string, double>();
this.localSpeciesVariables = new Dictionary<string, double>();
this.localSpeciesDelta = new Dictionary<string, double>();
this.speciesToIndexMap = new Dictionary<string, int>();
this.indexToSpeciesMap = new Dictionary<int, string>();
// set up the list
this.convertSpeciesListToVariables();
this.components = new List<MuCell.Model.SBML.ExtracellularComponents.ComponentWorldStateBase>();
this.flaggy = new MuCell.Model.SBML.ExtracellularComponents.FlagellaComponent();
cellInstanceSpatialContext = new SpatialContext();
}