Ejemplo n.º 1
0
        public static ComponentBase ComponentFactory(string componentType)
        {
            switch(componentType)
               {
               case("Flagella"):
                   {
                       FlagellaComponent component= new FlagellaComponent();
                       component.componentType = componentType;
                       return component;
                   }
               case("Receptor"):
                   {
                       ReceptorComponent component = new ReceptorComponent();
                       component.componentType = componentType;
                       return component;
                   }
               case ("Cell Body"):
                   {
                       CellBodyComponent component = new CellBodyComponent();
                       component.componentType = componentType;
                       return component;
                   }
               }

            return null;
        }
Ejemplo n.º 2
0
        /// <summary>
        /// Constructor for creating a cell instance with a cell definition
        /// </summary>
        /// <param name="cellDefinition">
        /// A <see cref="CellDefinition"/>
        /// </param>
        public CellInstance(CellDefinition cellDefinition)
        {
            this.cellInstanceDefinition = cellDefinition;
            SBML.Model model = cellDefinition.getModel();
            if (model != null)
            {
                this.species = cellDefinition.getModel().listOfSpecies;
            }
            // Initialize the specials Dictionary
            this.speciesVariables = new Dictionary<string, double>();

            this.localSpeciesVariables = new Dictionary<string, double>();
            this.localSpeciesDelta = new Dictionary<string, double>();

            this.speciesToIndexMap = new Dictionary<string, int>();
            this.indexToSpeciesMap = new Dictionary<int, string>();

            // set up the list
            this.convertSpeciesListToVariables();

            this.components = new List<MuCell.Model.SBML.ExtracellularComponents.ComponentWorldStateBase>();

            this.flaggy = new MuCell.Model.SBML.ExtracellularComponents.FlagellaComponent();

            cellInstanceSpatialContext = new SpatialContext();
        }