public int Compare(Object object1, Object object2)
{
Sample sample1, sample2;
sample1 = (Sample)object1;
sample2 = (Sample)object2;
return(ChiasmaData.CompareStringWithNumbers(sample1.GetIdentifier(), sample2.GetIdentifier()));
}
public virtual int CompareTo(object obj)
{
if (obj is DataIdentifier)
{
DataIdentifier dataIdentifier = (DataIdentifier)obj;
if (GetDataType() != dataIdentifier.GetDataType())
{
return(GetDataType().ToString().CompareTo(dataIdentifier.GetDataType().ToString()));
}
else
{
return(ChiasmaData.CompareStringWithNumbers(MyIdentifier, dataIdentifier.GetIdentifier()));
}
}
throw new ArgumentException("Object is not a DataIdentifier");
}
private void UploadInternalReport(object sender, EventArgs e)
{
String appName, appVersion, settingString;
InternalReport report;
DataTable resultPlatesTable, itemStatTable, markerStatTable, genotypeResultsTable;
try
{
MyBackgroundWorker.ReportProgress(0, "Connecting to Chiasma database...");
ChiasmaData.LoginChiasmaDataBase();
ChiasmaData.Database.BeginTransaction();
appName = Assembly.GetExecutingAssembly().GetName().Name;
appVersion = Assembly.GetExecutingAssembly().GetName().Version.Major + "." +
Assembly.GetExecutingAssembly().GetName().Version.Minor + "." +
Assembly.GetExecutingAssembly().GetName().Version.Build + "." +
Assembly.GetExecutingAssembly().GetName().Version.Revision;
settingString = GetSettingString();
report = InternalReportManager.CreateInternalReport(MyInternalReportName, UserManager.GetCurrentUser().GetId(),
MyProject.ID, appName + " " + appVersion, false, "", settingString);
//Read and store included result plates.
MyBackgroundWorker.ReportProgress(0, "Uploading plate information...");
if (MyBackgroundWorker.CancellationPending)
{
throw new UserCanceledException();
}
resultPlatesTable = GetResultPlatesTable(report.GetId());
if (resultPlatesTable.Rows.Count < 1)
{
throw new System.Exception("No result plates found.");
}
ChiasmaData.Database.AddInternalReportResultPlates(resultPlatesTable);
//Read and store item statistics.
MyBackgroundWorker.ReportProgress(0, "Uploading item statistics...");
if (MyBackgroundWorker.CancellationPending)
{
throw new UserCanceledException();
}
itemStatTable = GetItemStatsTable(report.GetId());
if (itemStatTable.Rows.Count < 1)
{
throw new System.Exception("No item statistics found.");
}
SetNameToItemTable(ref itemStatTable);
ChiasmaData.Database.AddInternalReportItemStatistics(itemStatTable);
//Read and store marker statistics.
MyBackgroundWorker.ReportProgress(0, "Uploading marker statistics...");
if (MyBackgroundWorker.CancellationPending)
{
throw new UserCanceledException();
}
markerStatTable = GetMarkerStatsTable(report.GetId());
if (markerStatTable.Rows.Count < 1)
{
throw new System.Exception("No marker statistics found.");
}
ChiasmaData.Database.AddInternalReportMarkerStatistics(markerStatTable);
//Read and store genotype results.
MyBackgroundWorker.ReportProgress(0, "Uploading genotype results...");
if (MyBackgroundWorker.CancellationPending)
{
throw new UserCanceledException();
}
genotypeResultsTable = GetGenotypeResultsTable(report.GetId());
if (genotypeResultsTable.Rows.Count < 1)
{
throw new System.Exception("No genotype results found.");
}
SetNameToResultsTable(ref genotypeResultsTable);
ChiasmaData.Database.AddInternalReportResults(genotypeResultsTable);
ChiasmaData.Database.CommitTransaction();
MessageBox.Show("The internal report was successfully updated!", "Upload internal report", MessageBoxButtons.OK, MessageBoxIcon.Information);
}
catch (ConnectDatabaseException ex)
{
ChiasmaData.HandleError(ex.GetMessage(), ex);
}
catch (InternalReportAlreadyDefinedException ex)
{
ChiasmaData.Database.RollbackTransaction();
ChiasmaData.HandleError("Error when uploading report! ", ex);
}
catch (UserCanceledException ex)
{
ChiasmaData.Database.RollbackTransaction();
MessageBox.Show(ex.GetUploadCanceledMessage(), "Upload internal report", MessageBoxButtons.OK, MessageBoxIcon.Information);
}
catch (Exception ex)
{
ChiasmaData.Database.RollbackTransaction();
ChiasmaData.HandleError("Error when uploading internal report", ex);
}
finally
{
ChiasmaData.LogoutChiasmaDatabase();
}
}
