Ejemplo n.º 1
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 protected SBMLImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, ASTHandler astHandler, IMoBiContext context)
 {
     ObjectPathFactory = objectPathFactory;
     ObjectBaseFactory = objectBaseFactory;
     _astHandler       = astHandler;
     _context          = context;
 }
Ejemplo n.º 2
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 public CompartmentImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory,
                            IMoBiSpatialStructureFactory spatialStructureFactory, IMoBiDimensionFactory moBiDimensionFactory,
                            ASTHandler astHandler, IMoBiContext context)
     : base(objectPathFactory, objectBaseFactory, astHandler, context)
 {
     _objectBaseFactory       = objectBaseFactory;
     _spatialStructureFactory = spatialStructureFactory;
     _dimensionFactory        = moBiDimensionFactory;
 }
Ejemplo n.º 3
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 public EventImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, ASTHandler astHandler, IMoBiContext context) : base(objectPathFactory, objectBaseFactory, astHandler, context)
 {
     _eventAssignmentList = new List <IEventAssignment>();
     _counter             = 0;
 }
Ejemplo n.º 4
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 public AssignmentImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, InitialAssignmentImporter initialAssignmentImporter, RuleImporter ruleImporter, ASTHandler astHandler, IMoBiContext context) : base(objectPathFactory, objectBaseFactory, astHandler, context)
 {
     _initialAssignmentImporter = initialAssignmentImporter;
     _ruleImporter = ruleImporter;
 }
Ejemplo n.º 5
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 public ReactionImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, IMoBiDimensionFactory moBiDimensionFactory, ASTHandler astHandler, IMoBiContext context, IReactionBuildingBlockFactory reactionBuildingBlockFactory)
     : base(objectPathFactory, objectBaseFactory, astHandler, context)
 {
     _dimensionFactory              = moBiDimensionFactory;
     ReactionBuilderList            = new List <IReactionBuilder>();
     _passiveTransportList          = new List <ITransportBuilder>();
     _reactionBuildingBlock         = reactionBuildingBlockFactory.Create().WithName(SBMLConstants.SBML_REACTION_BB);
     _passiveTransportBuildingBlock = ObjectBaseFactory.Create <IPassiveTransportBuildingBlock>()
                                      .WithName(SBMLConstants.SBML_PASSIVETRANSPORTS_BB);
 }
Ejemplo n.º 6
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 public FunctionDefinitionImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, ASTHandler astHandler, IMoBiContext context) : base(objectPathFactory, objectBaseFactory, astHandler, context)
 {
     _functionDefinitions = new List <FunctionDefinition>();
 }
Ejemplo n.º 7
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 public InitialAssignmentImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, ASTHandler astHandler, IMoBiContext context) : base(objectPathFactory, objectBaseFactory, astHandler, context)
 {
 }
Ejemplo n.º 8
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 public RuleImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, ASTHandler astHandler, IMoBiContext context, IReactionBuildingBlockFactory reactionBuildingBlockFactory) : base(objectPathFactory, objectBaseFactory, astHandler, context)
 {
     _reactionBuildingBlockFactory = reactionBuildingBlockFactory;
 }
Ejemplo n.º 9
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 protected AssignmentImporterBase(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, ASTHandler astHandler, IMoBiContext context) : base(objectPathFactory, objectBaseFactory, astHandler, context)
 {
 }
Ejemplo n.º 10
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 public UnitDefinitionImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, IMoBiDimensionFactory mobiDimensionFactory, ASTHandler astHandler, IMoBiContext context) : base(objectPathFactory, objectBaseFactory, astHandler, context)
 {
     _moBiDimensionFactory = mobiDimensionFactory;
     _baseUnitsDictionary  = new Dictionary <int, Unit>();
     InitBaseUnitsDictionary();
 }
Ejemplo n.º 11
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 public ParameterImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, ASTHandler astHandler, IMoBiContext context)
     : base(objectPathFactory, objectBaseFactory, astHandler, context)
 {
     _paramList = new List <IEntity>();
 }
Ejemplo n.º 12
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 public SpeciesImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, IMoleculeBuilderFactory moleculeBuilderFactory, IMoleculeStartValuesCreator moleculeStartValuesCreator, IMoBiDimensionFactory moBiDimensionFactory, ASTHandler astHandler, IMoBiContext context)
     : base(objectPathFactory, objectBaseFactory, astHandler, context)
 {
     _moleculeBuilderFactory     = moleculeBuilderFactory;
     _moleculeStartValuesCreator = moleculeStartValuesCreator;
     _moBiDimensionFactory       = moBiDimensionFactory;
     _counter             = 1;
     _dimensionDictionary = new Dictionary <string, Dimension>();
 }