/// <summary>
/// Constructor for Mortality: fills the list with available implementations of mortality
/// <param name="globalModelTimeStepUnit">The time step for the global model</param>
/// </summary>
public Mortality(string globalModelTimeStepUnit)
{
// Initialize the list of mortality implementations
Implementations = new SortedList<string, IMortalityImplementation>();
// Add the background mortality implementation to the list of implementations
BackgroundMortality BackgroundMortalityImplementation = new BackgroundMortality(globalModelTimeStepUnit);
Implementations.Add("basic background mortality", BackgroundMortalityImplementation);
// Add the senescence mortality implementation to the list of implementations
SenescenceMortality SenescenceMortalityImplementation = new SenescenceMortality(globalModelTimeStepUnit);
Implementations.Add("basic senescence mortality", SenescenceMortalityImplementation);
// Add the starvation mortality implementation to the list of implementations
StarvationMortality StarvationMortalityImplementation = new StarvationMortality(globalModelTimeStepUnit);
Implementations.Add("basic starvation mortality", StarvationMortalityImplementation);
}
/// <summary>
/// Constructor for Mortality: fills the list with available implementations of mortality
/// <param name="globalModelTimeStepUnit">The time step for the global model</param>
/// </summary>
public Mortality(string globalModelTimeStepUnit)
{
// Initialize the list of mortality implementations
Implementations = new SortedList <string, IMortalityImplementation>();
// Add the background mortality implementation to the list of implementations
BackgroundMortality BackgroundMortalityImplementation = new BackgroundMortality(globalModelTimeStepUnit);
Implementations.Add("basic background mortality", BackgroundMortalityImplementation);
// Add the senescence mortality implementation to the list of implementations
SenescenceMortality SenescenceMortalityImplementation = new SenescenceMortality(globalModelTimeStepUnit);
Implementations.Add("basic senescence mortality", SenescenceMortalityImplementation);
// Add the starvation mortality implementation to the list of implementations
StarvationMortality StarvationMortalityImplementation = new StarvationMortality(globalModelTimeStepUnit);
Implementations.Add("basic starvation mortality", StarvationMortalityImplementation);
}
/// <summary>
/// Copy parameter values to a text file in the specified output directory
/// </summary>
/// <param name="outputDirectory">THe directory for outputs</param>
public void CopyParameterValues(string outputDirectory)
{
// Create a stream write object to write the parameter values to
StreamWriter sw = new StreamWriter(outputDirectory + "Parameters.txt");
// Write out the column headings
sw.WriteLine("Ecological process\tParameter name\tParameter value");
// Create dummy instances of the ecological processes
RevisedHerbivory DummyHerbivory = new RevisedHerbivory(0.0, _GlobalModelTimeStepUnit);
RevisedPredation DummyPredation = new RevisedPredation(0.0, _GlobalModelTimeStepUnit);
MetabolismEndotherm DummyEndoMetabolism = new MetabolismEndotherm(_GlobalModelTimeStepUnit);
MetabolismEctotherm DummyEctoMetabolism = new MetabolismEctotherm(_GlobalModelTimeStepUnit);
BackgroundMortality DummyBackgroundMortality = new BackgroundMortality(_GlobalModelTimeStepUnit);
SenescenceMortality DummySenescenceMortality = new SenescenceMortality(_GlobalModelTimeStepUnit);
StarvationMortality DummyStarvationMortality = new StarvationMortality(_GlobalModelTimeStepUnit);
ReproductionBasic DummyReproduction = new ReproductionBasic(_GlobalModelTimeStepUnit, _DrawRandomly);
DiffusiveDispersal DummyDiffusiveDispersal = new DiffusiveDispersal(_GlobalModelTimeStepUnit, _DrawRandomly);
RevisedTerrestrialPlantModel DummyPlantModel = new RevisedTerrestrialPlantModel();
Activity DummyActivityModel = new Activity();
// Call the methods in these processes that write the parameter values out
DummyHerbivory.WriteOutParameterValues(sw);
DummyPredation.WriteOutParameterValues(sw);
DummyEndoMetabolism.WriteOutParameterValues(sw);
DummyEctoMetabolism.WriteOutParameterValues(sw);
DummyBackgroundMortality.WriteOutParameterValues(sw);
DummySenescenceMortality.WriteOutParameterValues(sw);
DummyStarvationMortality.WriteOutParameterValues(sw);
DummyReproduction.WriteOutParameterValues(sw);
DummyDiffusiveDispersal.WriteOutParameterValues(sw);
DummyPlantModel.WriteOutParameterValues(sw);
DummyActivityModel.WriteOutParameterValues(sw);
sw.Dispose();
}