public InputCatchData(float[] modelLats, float[] modelLons, float cellSize)
{
StreamReader r_ht = new StreamReader("input\\data\\Fisheries\\catchratesyr2000HT.csv");
StreamReader r = new StreamReader("input\\data\\Fisheries\\catchrateyr2000.csv");
//Read trait data
Traits = new FishTraits();
//Retrieve the Max Mass range from the trait data
var temp = Traits.MassRange();
double[] MaxMassRange = temp.Item1;
string[] MaxMassRangeSp = temp.Item2;
//Calculate a set of mass bins to be used for removing fisheries catches from binned Madingley biomasses
//TO DO: make these bins flexible and user defined
int MinMassbinMax = Convert.ToInt32(Math.Ceiling(Math.Log10(MaxMassRange[0])));
int MaxMassbinMax = Convert.ToInt32(Math.Ceiling(Math.Log10(MaxMassRange[1])));
int NumBins = (MaxMassbinMax - MinMassbinMax) + 1;
_MassBins = new double[NumBins];
for (int i = 0; i < NumBins - 1; i++)
{
_MassBins[i] = Math.Pow(10, MinMassbinMax + i);
}
_UnknownMassBinIndex = NumBins - 1;
string l;
char[] comma = ",".ToCharArray();
string[] f;
List<int> year_ht = new List<int>();
List<int> cell_ht = new List<int>();
List<double> catchRate_ht = new List<Double>();
List<string> taxa_ht = new List<string>();
List<int> year = new List<int>();
List<int> cell = new List<int>();
List<double> catchRate = new List<Double>();
List<string> taxa = new List<string>();
//Read the Higher Taxonomy file
while (!r_ht.EndOfStream)
{
l = r_ht.ReadLine();
// Split fields by commas
f = l.Split(comma);
// Lists of the different fields
year_ht.Add(Convert.ToInt32(f[0]));
cell_ht.Add(Convert.ToInt32(f[1]));
catchRate_ht.Add(Convert.ToDouble(f[2]));
taxa_ht.Add(f[3]);
}
//Read the species catch file
while (!r.EndOfStream)
{
l = r.ReadLine();
// Split fields by commas
f = l.Split(comma);
// Lists of the different fields
year.Add(Convert.ToInt32(f[0]));
cell.Add(Convert.ToInt32(f[1]));
catchRate.Add(Convert.ToDouble(f[2]));
taxa.Add(f[3]);
}
float MinLon = -179.75f;
float MaxLon = 179.75f;
float MaxLat = 89.75f;
float MinLat = -89.75f;
_CatchNumLats = (int)((MaxLat - MinLat) / 0.5) + 1;
_CatchNumLons = (int)((MaxLon - MinLon) / 0.5) + 1;
_CatchTotal = new double[_CatchNumLats, _CatchNumLons];
_CatchBinned = new double[_CatchNumLats, _CatchNumLons, NumBins];
UnknownTaxa = new List<string>[_CatchNumLats, _CatchNumLons];
for (int i = 0; i < UnknownTaxa.GetLength(0); i++)
{
for (int j = 0; j < UnknownTaxa.GetLength(1); j++)
{
UnknownTaxa[i, j] = new List<string>();
}
}
_CatchLats = new float[_CatchNumLats];
_CatchLons = new float[_CatchNumLons];
int[] Index;
// Match lon index to lon
for (int i = 0; i < _CatchNumLons; i++)
{
_CatchLons[i] = MinLon + (i * 0.5f);
}
// Match lat index to lat
for (int i = 0; i < _CatchNumLats; i++)
{
_CatchLats[i] = MaxLat - (i * 0.5f);
}
//Will hold the mass bin index for the catch data
int mb = 0;
//Allocate the species level catch to cells and mass bins
for (int i = 0; i < catchRate.Count; i++)
{
Index = IndexLookup(cell[i]);
//Need to convert to size bins
mb = AssignCatchToMassBin(taxa[i]);
_CatchTotal[Index[0], Index[1]] += catchRate[i] * 1E6;
_CatchBinned[Index[0], Index[1], mb] += catchRate[i] * 1E6;
//If the taxa does not have trait data then list this taxa
if (mb == UnknownMassBinIndex) UnknownTaxa[Index[0], Index[1]].Add(taxa[i]);
}
//Allocate the higher taxa level catch to cells and mass bins
for (int i = 0; i < catchRate_ht.Count; i++)
{
Index = IndexLookup(cell_ht[i]);
//Need to convert to size bins
mb = AssignCatchToMassBin(taxa_ht[i]);
_CatchTotal[Index[0], Index[1]] += catchRate_ht[i] * 1E6;
_CatchBinned[Index[0], Index[1], mb] += catchRate_ht[i] * 1E6;
//If the taxa does not have trait data then list this taxa
if (mb == UnknownMassBinIndex) UnknownTaxa[Index[0], Index[1]].Add(taxa_ht[i]);
}
//foreach (var u in UnknownTaxa)
//{
// if (u.Count > 0.0) Console.WriteLine(u.Count);
//}
double CumulativeCatch = 0.0;
for (int i = 0; i < _CatchTotal.GetLength(0); i++)
{
for (int j = 0; j < _CatchTotal.GetLength(1); j++)
{
CumulativeCatch += _CatchTotal[i, j];
}
}
Console.WriteLine(CumulativeCatch);
AggregateCatchData(modelLats, modelLons, cellSize);
}
public InputCatchData(float[] modelLats, float[] modelLons, float cellSize)
{
StreamReader r_ht = new StreamReader("input\\data\\Fisheries\\catchratesyr2000HT.csv");
StreamReader r = new StreamReader("input\\data\\Fisheries\\catchrateyr2000.csv");
//Read trait data
Traits = new FishTraits();
//Retrieve the Max Mass range from the trait data
var temp = Traits.MassRange();
double[] MaxMassRange = temp.Item1;
string[] MaxMassRangeSp = temp.Item2;
//Calculate a set of mass bins to be used for removing fisheries catches from binned Madingley biomasses
//TO DO: make these bins flexible and user defined
int MinMassbinMax = Convert.ToInt32(Math.Ceiling(Math.Log10(MaxMassRange[0])));
int MaxMassbinMax = Convert.ToInt32(Math.Ceiling(Math.Log10(MaxMassRange[1])));
int NumBins = (MaxMassbinMax - MinMassbinMax) + 1;
_MassBins = new double[NumBins];
for (int i = 0; i < NumBins - 1; i++)
{
_MassBins[i] = Math.Pow(10, MinMassbinMax + i);
}
_UnknownMassBinIndex = NumBins - 1;
string l;
char[] comma = ",".ToCharArray();
string[] f;
List <int> year_ht = new List <int>();
List <int> cell_ht = new List <int>();
List <double> catchRate_ht = new List <Double>();
List <string> taxa_ht = new List <string>();
List <int> year = new List <int>();
List <int> cell = new List <int>();
List <double> catchRate = new List <Double>();
List <string> taxa = new List <string>();
//Read the Higher Taxonomy file
while (!r_ht.EndOfStream)
{
l = r_ht.ReadLine();
// Split fields by commas
f = l.Split(comma);
// Lists of the different fields
year_ht.Add(Convert.ToInt32(f[0]));
cell_ht.Add(Convert.ToInt32(f[1]));
catchRate_ht.Add(Convert.ToDouble(f[2]));
taxa_ht.Add(f[3]);
}
//Read the species catch file
while (!r.EndOfStream)
{
l = r.ReadLine();
// Split fields by commas
f = l.Split(comma);
// Lists of the different fields
year.Add(Convert.ToInt32(f[0]));
cell.Add(Convert.ToInt32(f[1]));
catchRate.Add(Convert.ToDouble(f[2]));
taxa.Add(f[3]);
}
float MinLon = -179.75f;
float MaxLon = 179.75f;
float MaxLat = 89.75f;
float MinLat = -89.75f;
_CatchNumLats = (int)((MaxLat - MinLat) / 0.5) + 1;
_CatchNumLons = (int)((MaxLon - MinLon) / 0.5) + 1;
_CatchTotal = new double[_CatchNumLats, _CatchNumLons];
_CatchBinned = new double[_CatchNumLats, _CatchNumLons, NumBins];
UnknownTaxa = new List <string> [_CatchNumLats, _CatchNumLons];
for (int i = 0; i < UnknownTaxa.GetLength(0); i++)
{
for (int j = 0; j < UnknownTaxa.GetLength(1); j++)
{
UnknownTaxa[i, j] = new List <string>();
}
}
_CatchLats = new float[_CatchNumLats];
_CatchLons = new float[_CatchNumLons];
int[] Index;
// Match lon index to lon
for (int i = 0; i < _CatchNumLons; i++)
{
_CatchLons[i] = MinLon + (i * 0.5f);
}
// Match lat index to lat
for (int i = 0; i < _CatchNumLats; i++)
{
_CatchLats[i] = MaxLat - (i * 0.5f);
}
//Will hold the mass bin index for the catch data
int mb = 0;
//Allocate the species level catch to cells and mass bins
for (int i = 0; i < catchRate.Count; i++)
{
Index = IndexLookup(cell[i]);
//Need to convert to size bins
mb = AssignCatchToMassBin(taxa[i]);
_CatchTotal[Index[0], Index[1]] += catchRate[i] * 1E6;
_CatchBinned[Index[0], Index[1], mb] += catchRate[i] * 1E6;
//If the taxa does not have trait data then list this taxa
if (mb == UnknownMassBinIndex)
{
UnknownTaxa[Index[0], Index[1]].Add(taxa[i]);
}
}
//Allocate the higher taxa level catch to cells and mass bins
for (int i = 0; i < catchRate_ht.Count; i++)
{
Index = IndexLookup(cell_ht[i]);
//Need to convert to size bins
mb = AssignCatchToMassBin(taxa_ht[i]);
_CatchTotal[Index[0], Index[1]] += catchRate_ht[i] * 1E6;
_CatchBinned[Index[0], Index[1], mb] += catchRate_ht[i] * 1E6;
//If the taxa does not have trait data then list this taxa
if (mb == UnknownMassBinIndex)
{
UnknownTaxa[Index[0], Index[1]].Add(taxa_ht[i]);
}
}
//foreach (var u in UnknownTaxa)
//{
// if (u.Count > 0.0) Console.WriteLine(u.Count);
//}
double CumulativeCatch = 0.0;
for (int i = 0; i < _CatchTotal.GetLength(0); i++)
{
for (int j = 0; j < _CatchTotal.GetLength(1); j++)
{
CumulativeCatch += _CatchTotal[i, j];
}
}
Console.WriteLine(CumulativeCatch);
AggregateCatchData(modelLats, modelLons, cellSize);
}
