//---------------------------------------------------------------------
public override void Initialize(string dataFile,
PlugIns.ICore modelCore)
{
Model.Core = modelCore;
ParametersParser parser = new ParametersParser(Model.Core.Ecoregions, Model.Core.Species);
IParameters parameters = Landis.Data.Load<IParameters>(dataFile, parser);
Timestep = parameters.Timestep;
// Cohorts must be created before the base class is initialized
// because the base class' reproduction module uses the core's
// SuccessionCohorts property in its Initialization method.
Biomass.Cohorts.Initialize(Timestep,
new CohortBiomass());
cohorts = Model.Core.Landscape.NewSiteVar<SiteCohorts>();
landscapeCohorts = new LandscapeCohorts(cohorts);
Cohorts = landscapeCohorts;
InitialBiomass.Initialize(Timestep);
Dead.Pools.Initialize(modelCore,
parameters.WoodyDecayRate,
parameters.LeafLitterDecayRate);
double[,] estabProbabilities = new double[Model.Core.Ecoregions.Count, Model.Core.Species.Count];
foreach (ISpecies species in Model.Core.Species) {
foreach (IEcoregion ecoregion in Model.Core.Ecoregions) {
estabProbabilities[ecoregion.Index, species.Index] = parameters.EstablishProbability[species][ecoregion];
}
}
base.Initialize(modelCore,
estabProbabilities,
parameters.SeedAlgorithm,
AddNewCohort);
LivingBiomass.Initialize(parameters, cohorts);
Cohort.DeathEvent += CohortDied;
AgeOnlyDisturbances.Module.Initialize(parameters.AgeOnlyDisturbanceParms);
}
//---------------------------------------------------------------------
public override void Initialize(string dataFile,
PlugIns.ICore modelCore)
{
Model.Core = modelCore;
ParametersParser parser = new ParametersParser(Model.Core.Ecoregions,
Model.Core.Species,
Model.Core.StartTime,
Model.Core.EndTime);
IParameters parameters = Landis.Data.Load<IParameters>(dataFile, parser);
Timestep = parameters.Timestep;
// Cohorts must be created before the base class is initialized
// because the base class' reproduction module uses the core's
// SuccessionCohorts property in its Initialization method.
Biomass.Cohorts.Initialize(Timestep,
new CohortBiomass());
cohorts = Model.Core.Landscape.NewSiteVar<SiteCohorts>();
landscapeCohorts = new LandscapeCohorts(cohorts);
Cohorts = landscapeCohorts;
InitialBiomass.Initialize(Timestep);
Dead.Pools.Initialize(modelCore,
parameters.WoodyDecayRate,
parameters.LeafLitterDecayRate);
base.Initialize(modelCore,
Util.ToArray<double>(parameters.EstablishProbability),
parameters.SeedAlgorithm,
(Reproduction.Delegates.AddNewCohort) AddNewCohort);
LivingBiomass.Initialize(parameters, cohorts);
Cohort.DeathEvent += CohortDied;
AgeOnlyDisturbances.Module.Initialize(parameters.AgeOnlyDisturbanceParms);
ClimateChange.Module.Initialize(parameters.ClimateChangeUpdates);
}
//---------------------------------------------------------------------
public override void Initialize(string dataFile,
PlugIns.ICore modelCore)
{
Model.Core = modelCore;
InputParametersParser parser = new InputParametersParser();
IInputParameters parameters = Landis.Data.Load<IInputParameters>(dataFile, parser);
Timestep = parameters.Timestep;
CalibrateMode = parameters.CalibrateMode;
CohortBiomass.SpinupMortalityFraction = parameters.SpinupMortalityFraction;
sufficientLight = parameters.LightClassProbabilities;
pctSun1 = parameters.PctSun1;
pctSun2 = parameters.PctSun2;
pctSun3 = parameters.PctSun3;
pctSun4 = parameters.PctSun4;
pctSun5 = parameters.PctSun5;
SiteVars.Initialize();
SpeciesData.Initialize(parameters);
EcoregionData.Initialize(parameters);
DynamicInputs.Initialize(parameters.DynamicInputFile, false);
SpeciesData.ChangeDynamicParameters(0); // Year 0
Outputs.Initialize(parameters);
// Cohorts must be created before the base class is initialized
// because the base class' reproduction module uses the core's
// SuccessionCohorts property in its Initialization method.
Biomass.Cohorts.Initialize(Timestep, new CohortBiomass());
//cohorts = SiteVars.Cohorts; //Model.Core.Landscape.NewSiteVar<SiteCohorts>();
landscapeCohorts = new LandscapeCohorts(SiteVars.Cohorts);
Cohorts = landscapeCohorts;
Reproduction.SufficientLight = SufficientLight;
InitialBiomass.Initialize(Timestep);
//LivingBiomass.Initialize(parameters, cohorts);
base.Initialize(modelCore,
Util.ToArray<double>(SpeciesData.EstablishProbability),
parameters.SeedAlgorithm,
(Reproduction.Delegates.AddNewCohort)AddNewCohort);
Cohort.DeathEvent += CohortDied;
AgeOnlyDisturbances.Module.Initialize(parameters.AgeOnlyDisturbanceParms);
//DynamicChange.Module.Initialize(parameters.DynamicChangeUpdates);
}
