/// <summary>
/// Analyze trace table.
/// </summary>
/// <param name="traceTable">tracing target</param>
/// <param name="distance">distance of samples</param>
/// <returns>MatchingResult data.</returns>
public static MatchingResult Trace(int[,] traceTable, double distance)
{
MatchingResult r = new MatchingResult();
r.Distance = distance;
int tf = traceTable.GetLength(1);
int rf = traceTable.GetLength(0);
int ri = rf - 1;
int ti = tf - 1;
List <int> insertions = new List <int>();
List <IndexTuple> deletions = new List <IndexTuple>();
List <IndexTuple> substitutions = new List <IndexTuple>();
while (ri > 0 && ti > 0)
{
int min = new[] { traceTable[ri - 1, ti], traceTable[ri, ti - 1], traceTable[ri - 1, ti - 1] }
.Min();
if (traceTable[ri - 1, ti - 1] == min)
{
if (traceTable[ri, ti] != traceTable[ri - 1, ti - 1])
{
substitutions.Add(new IndexTuple(ti - 1, ri - 1));
}
ri--; ti--;
}
else if (traceTable[ri, ti - 1] == min)
{
insertions.Add(ti - 1);
ti--;
}
else
{
deletions.Add(new IndexTuple(ti, ri - 1));
ri--;
}
}
if (ri != 0)
{
// reference index is remain.
// -> Deletion error
Enumerable.Range(0, ri)
.ForEach(i => deletions.Add(new IndexTuple(0, i)));
}
if (ti != 0)
{
// test index is remain.
// -> Insertion error
Enumerable.Range(0, ti)
.ForEach(insertions.Add);
}
// OrderBy method is a stable sort.
r.InsertionIndexes = insertions.OrderBy(i => i).ToArray();
r.DeletionIndexes = deletions.OrderBy(i => i.IndexOfReference).OrderBy(i => i.IndexOfText).ToArray();
r.SubstitutionIndexes = substitutions.OrderBy(i => i.IndexOfReference).OrderBy(i => i.IndexOfText).ToArray();
return(r);
}
/// <summary>
/// Analyze trace table.
/// </summary>
/// <param name="traceTable">tracing target</param>
/// <param name="distance">distance of samples</param>
/// <returns>MatchingResult data.</returns>
public static MatchingResult Trace(int[,] traceTable, double distance)
{
MatchingResult r = new MatchingResult();
r.Distance = distance;
int tf = traceTable.GetLength(1);
int rf = traceTable.GetLength(0);
int ri = rf - 1;
int ti = tf - 1;
List<int> insertions = new List<int>();
List<IndexTuple> deletions = new List<IndexTuple>();
List<IndexTuple> substitutions = new List<IndexTuple>();
while (ri > 0 && ti > 0)
{
int min = new[] { traceTable[ri - 1, ti], traceTable[ri, ti - 1], traceTable[ri - 1, ti - 1] }
.Min();
if (traceTable[ri - 1, ti - 1] == min)
{
if (traceTable[ri, ti] != traceTable[ri - 1, ti - 1])
substitutions.Add(new IndexTuple(ti - 1, ri - 1));
ri--; ti--;
}
else if (traceTable[ri, ti - 1] == min)
{
insertions.Add(ti - 1);
ti--;
}
else
{
deletions.Add(new IndexTuple(ti, ri - 1));
ri--;
}
}
if (ri != 0)
{
// reference index is remain.
// -> Deletion error
Enumerable.Range(0, ri)
.ForEach(i => deletions.Add(new IndexTuple(0, i)));
}
if (ti != 0)
{
// test index is remain.
// -> Insertion error
Enumerable.Range(0, ti)
.ForEach(insertions.Add);
}
// OrderBy method is a stable sort.
r.InsertionIndexes = insertions.OrderBy(i => i).ToArray();
r.DeletionIndexes = deletions.OrderBy(i => i.IndexOfReference).OrderBy(i => i.IndexOfText).ToArray();
r.SubstitutionIndexes = substitutions.OrderBy(i => i.IndexOfReference).OrderBy(i => i.IndexOfText).ToArray();
return r;
}
