/// <summary>
/// Get the modification combinations in the current sequence graph
/// </summary>
/// <returns></returns>
public ModificationCombination[] GetModificationCombinations()
{
var numModCombs = _graph[_index].Length;
var modCombs = new ModificationCombination[numModCombs];
for (var modIndex = 0; modIndex < numModCombs; modIndex++)
{
modCombs[modIndex] = ModificationParams.GetModificationCombination(_graph[_index][modIndex].ModificationCombinationIndex);
}
return(modCombs);
}
private void CataloguePossibleModificationCombinations()
{
_indexToHashValue = new Dictionary <int, long>();
_hashValueToModCombIndex = new Dictionary <long, int>();
var combinations = SimpleMath.GetCombinationsWithRepetition(_modifications.Length + 1, _maxNumDynModsPerSequence);
_modificationCombinations = new ModificationCombination[combinations.Length];
var index = -1;
foreach (var combination in combinations)
{
var modList = (from i in combination where i > 0 select _modifications[i - 1]).ToList();
var modComb = new ModificationCombination(modList);
_modificationCombinations[++index] = modComb;
var hashValue = ToHash(combination);
_indexToHashValue[index] = hashValue;
_hashValueToModCombIndex[hashValue] = index;
}
}
public ModificationCombination[] GetModificationCombinations()
{
var numModCombs = _graph[_index].Length;
var modCombs = new ModificationCombination[numModCombs];
for (var modIndex = 0; modIndex < numModCombs; modIndex++)
{
modCombs[modIndex] = ModificationParams.GetModificationCombination(_graph[_index][modIndex].ModificationCombinationIndex);
}
return modCombs;
}
private void CataloguePossibleModificationCombinations()
{
_indexToHashValue = new Dictionary<int, long>();
_hashValueToModCombIndex = new Dictionary<long, int>();
var combinations = SimpleMath.GetCombinationsWithRepetition(_modifications.Length+1, _maxNumDynModsPerSequence);
_modificationCombinations = new ModificationCombination[combinations.Length];
var index = -1;
foreach (var combination in combinations)
{
var modList = (from i in combination where i > 0 select _modifications[i - 1]).ToList();
var modComb = new ModificationCombination(modList);
_modificationCombinations[++index] = modComb;
var hashValue = ToHash(combination);
_indexToHashValue[index] = hashValue;
_hashValueToModCombIndex[hashValue] = index;
}
}
