/// <summary>
/// Generates a condition (Hypertension)
/// </summary>
/// <param name="conditionNumber"></param>
/// <param name="patient"></param>
/// <returns></returns>
public HL7.Condition GenerateCondition(int conditionNumber, HL7.Patient patient)
{
HL7.Condition genCond = new HL7.Condition();
//give an id
genCond.Id = conditionNumber.ToString();
//give a patient association
HL7.ResourceReference patRefence = new HL7.ResourceReference();
patRefence.ReferenceElement = new HL7.FhirString("Patient/" + Int32.Parse(patient.Id));
genCond.Patient = patRefence;
//add a code
genCond.Code = new HL7.CodeableConcept("http://snomed.info/sct", "59621000", "Essential hypertension");
//add an onset time
TimeSpan age = new TimeSpan((long)(DateTime.Now.Subtract(DateTime.Parse(patient.BirthDate)).Ticks *rand.NextDouble()));
DateTime onsetDate = DateTime.Now.Subtract(age);
genCond.Onset = new HL7.FhirDateTime(onsetDate.Year, onsetDate.Month, onsetDate.Day);
return(genCond);
}
public static void SerializeCondition(Hl7.Fhir.Model.Condition value, IFhirWriter writer, bool summary)
{
writer.WriteStartRootObject("Condition");
writer.WriteStartComplexContent();
// Serialize element _id
if (value.LocalIdElement != null)
{
writer.WritePrimitiveContents("_id", value.LocalIdElement, XmlSerializationHint.Attribute);
}
// Serialize element extension
if (value.Extension != null && !summary && value.Extension.Count > 0)
{
writer.WriteStartArrayElement("extension");
foreach (var item in value.Extension)
{
writer.WriteStartArrayMember("extension");
ExtensionSerializer.SerializeExtension(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element language
if (value.LanguageElement != null && !summary)
{
writer.WriteStartElement("language");
CodeSerializer.SerializeCode(value.LanguageElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element text
if (value.Text != null && !summary)
{
writer.WriteStartElement("text");
NarrativeSerializer.SerializeNarrative(value.Text, writer, summary);
writer.WriteEndElement();
}
// Serialize element contained
if (value.Contained != null && !summary && value.Contained.Count > 0)
{
writer.WriteStartArrayElement("contained");
foreach (var item in value.Contained)
{
writer.WriteStartArrayMember("contained");
FhirSerializer.SerializeResource(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element subject
if (value.Subject != null && !summary)
{
writer.WriteStartElement("subject");
ResourceReferenceSerializer.SerializeResourceReference(value.Subject, writer, summary);
writer.WriteEndElement();
}
// Serialize element encounter
if (value.Encounter != null && !summary)
{
writer.WriteStartElement("encounter");
ResourceReferenceSerializer.SerializeResourceReference(value.Encounter, writer, summary);
writer.WriteEndElement();
}
// Serialize element asserter
if (value.Asserter != null && !summary)
{
writer.WriteStartElement("asserter");
ResourceReferenceSerializer.SerializeResourceReference(value.Asserter, writer, summary);
writer.WriteEndElement();
}
// Serialize element dateAsserted
if (value.DateAssertedElement != null && !summary)
{
writer.WriteStartElement("dateAsserted");
DateSerializer.SerializeDate(value.DateAssertedElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element code
if (value.Code != null && !summary)
{
writer.WriteStartElement("code");
CodeableConceptSerializer.SerializeCodeableConcept(value.Code, writer, summary);
writer.WriteEndElement();
}
// Serialize element category
if (value.Category != null && !summary)
{
writer.WriteStartElement("category");
CodeableConceptSerializer.SerializeCodeableConcept(value.Category, writer, summary);
writer.WriteEndElement();
}
// Serialize element status
if (value.StatusElement != null && !summary)
{
writer.WriteStartElement("status");
CodeSerializer.SerializeCode <Hl7.Fhir.Model.Condition.ConditionStatus>(value.StatusElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element certainty
if (value.Certainty != null && !summary)
{
writer.WriteStartElement("certainty");
CodeableConceptSerializer.SerializeCodeableConcept(value.Certainty, writer, summary);
writer.WriteEndElement();
}
// Serialize element severity
if (value.Severity != null && !summary)
{
writer.WriteStartElement("severity");
CodeableConceptSerializer.SerializeCodeableConcept(value.Severity, writer, summary);
writer.WriteEndElement();
}
// Serialize element onset
if (value.Onset != null && !summary)
{
writer.WriteStartElement(SerializationUtil.BuildPolymorphicName("onset", value.Onset.GetType()));
FhirSerializer.SerializeElement(value.Onset, writer, summary);
writer.WriteEndElement();
}
// Serialize element abatement
if (value.Abatement != null && !summary)
{
writer.WriteStartElement(SerializationUtil.BuildPolymorphicName("abatement", value.Abatement.GetType()));
FhirSerializer.SerializeElement(value.Abatement, writer, summary);
writer.WriteEndElement();
}
// Serialize element stage
if (value.Stage != null && !summary)
{
writer.WriteStartElement("stage");
ConditionSerializer.SerializeConditionStageComponent(value.Stage, writer, summary);
writer.WriteEndElement();
}
// Serialize element evidence
if (value.Evidence != null && !summary && value.Evidence.Count > 0)
{
writer.WriteStartArrayElement("evidence");
foreach (var item in value.Evidence)
{
writer.WriteStartArrayMember("evidence");
ConditionSerializer.SerializeConditionEvidenceComponent(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element location
if (value.Location != null && !summary && value.Location.Count > 0)
{
writer.WriteStartArrayElement("location");
foreach (var item in value.Location)
{
writer.WriteStartArrayMember("location");
ConditionSerializer.SerializeConditionLocationComponent(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element relatedItem
if (value.RelatedItem != null && !summary && value.RelatedItem.Count > 0)
{
writer.WriteStartArrayElement("relatedItem");
foreach (var item in value.RelatedItem)
{
writer.WriteStartArrayMember("relatedItem");
ConditionSerializer.SerializeConditionRelatedItemComponent(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element notes
if (value.NotesElement != null && !summary)
{
writer.WriteStartElement("notes");
FhirStringSerializer.SerializeFhirString(value.NotesElement, writer, summary);
writer.WriteEndElement();
}
writer.WriteEndComplexContent();
writer.WriteEndRootObject();
}
/// <summary>
/// Parse Condition
/// </summary>
public static Hl7.Fhir.Model.Condition ParseCondition(IFhirReader reader, ErrorList errors, Hl7.Fhir.Model.Condition existingInstance = null)
{
Hl7.Fhir.Model.Condition result = existingInstance != null ? existingInstance : new Hl7.Fhir.Model.Condition();
string currentElementName = reader.CurrentElementName;
reader.EnterElement();
while (reader.HasMoreElements())
{
var atName = reader.CurrentElementName;
// Parse element extension
if (atName == "extension")
{
result.Extension = new List <Hl7.Fhir.Model.Extension>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "extension"))
{
result.Extension.Add(ExtensionParser.ParseExtension(reader, errors));
}
reader.LeaveArray();
}
// Parse element language
else if (atName == "language")
{
result.LanguageElement = CodeParser.ParseCode(reader, errors);
}
// Parse element text
else if (atName == "text")
{
result.Text = NarrativeParser.ParseNarrative(reader, errors);
}
// Parse element contained
else if (atName == "contained")
{
result.Contained = new List <Hl7.Fhir.Model.Resource>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "contained"))
{
result.Contained.Add(ParserUtils.ParseContainedResource(reader, errors));
}
reader.LeaveArray();
}
// Parse element _id
else if (atName == "_id")
{
result.LocalIdElement = Id.Parse(reader.ReadPrimitiveContents(typeof(Id)));
}
// Parse element subject
else if (atName == "subject")
{
result.Subject = ResourceReferenceParser.ParseResourceReference(reader, errors);
}
// Parse element encounter
else if (atName == "encounter")
{
result.Encounter = ResourceReferenceParser.ParseResourceReference(reader, errors);
}
// Parse element asserter
else if (atName == "asserter")
{
result.Asserter = ResourceReferenceParser.ParseResourceReference(reader, errors);
}
// Parse element dateAsserted
else if (atName == "dateAsserted")
{
result.DateAssertedElement = DateParser.ParseDate(reader, errors);
}
// Parse element code
else if (atName == "code")
{
result.Code = CodeableConceptParser.ParseCodeableConcept(reader, errors);
}
// Parse element category
else if (atName == "category")
{
result.Category = CodeableConceptParser.ParseCodeableConcept(reader, errors);
}
// Parse element status
else if (atName == "status")
{
result.StatusElement = CodeParser.ParseCode <Hl7.Fhir.Model.Condition.ConditionStatus>(reader, errors);
}
// Parse element certainty
else if (atName == "certainty")
{
result.Certainty = CodeableConceptParser.ParseCodeableConcept(reader, errors);
}
// Parse element severity
else if (atName == "severity")
{
result.Severity = CodeableConceptParser.ParseCodeableConcept(reader, errors);
}
// Parse element onset
else if (atName.StartsWith("onset"))
{
result.Onset = FhirParser.ParseElement(reader, errors);
}
// Parse element abatement
else if (atName.StartsWith("abatement"))
{
result.Abatement = FhirParser.ParseElement(reader, errors);
}
// Parse element stage
else if (atName == "stage")
{
result.Stage = ConditionParser.ParseConditionStageComponent(reader, errors);
}
// Parse element evidence
else if (atName == "evidence")
{
result.Evidence = new List <Hl7.Fhir.Model.Condition.ConditionEvidenceComponent>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "evidence"))
{
result.Evidence.Add(ConditionParser.ParseConditionEvidenceComponent(reader, errors));
}
reader.LeaveArray();
}
// Parse element location
else if (atName == "location")
{
result.Location = new List <Hl7.Fhir.Model.Condition.ConditionLocationComponent>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "location"))
{
result.Location.Add(ConditionParser.ParseConditionLocationComponent(reader, errors));
}
reader.LeaveArray();
}
// Parse element relatedItem
else if (atName == "relatedItem")
{
result.RelatedItem = new List <Hl7.Fhir.Model.Condition.ConditionRelatedItemComponent>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "relatedItem"))
{
result.RelatedItem.Add(ConditionParser.ParseConditionRelatedItemComponent(reader, errors));
}
reader.LeaveArray();
}
// Parse element notes
else if (atName == "notes")
{
result.NotesElement = FhirStringParser.ParseFhirString(reader, errors);
}
else
{
errors.Add(String.Format("Encountered unknown element {0} while parsing {1}", reader.CurrentElementName, currentElementName), reader);
reader.SkipSubElementsFor(currentElementName);
result = null;
}
}
reader.LeaveElement();
return(result);
}
/// <summary>
/// Generate data to supplement server data
/// </summary>
/// <returns></returns>
public CreatedDataContainer CreateData()
{
//read the state data
DataTable stateData = ReadStateData();
DataTable states = stateData.DefaultView.ToTable(true, "State");
//parameters for the size of the generated data set
int maxPerState = 10;
int minPerState = 10;
int maxObsPerPatient = 5;
int minObsPerPatien = 1;
int maxCondPerPatient = 1;
double conditionProb = 0.15;
//set the starting patient number
int patientNumber = 100000;
int observationNumber = 100000;
int conditionNumber = 100000;
//lists to store the generated data
List <HL7.Patient> patList = new List <HL7.Patient>();
List <HL7.Observation> obsList = new List <HL7.Observation>();
List <HL7.Condition> condList = new List <HL7.Condition>();
//do patient generation per state
foreach (DataRow state in states.Rows)
{
//get the countys for the given state
List <DataRow> counties =
(from county in stateData.AsEnumerable()
where county.Field <string>("State").Equals(state.Field <string>("State"))
select county).ToList <DataRow>();
//randomly determine the number of patients per state
int patientCount = Convert.ToInt32(Math.Round(rand.NextDouble() * (maxPerState - minPerState))) + minPerState;
for (int i = 0; i < patientCount; i++)
{
//generate a practitioner id
//currently using IDs 1 - 5
int practId = rand.Next(1, 5);
//select a county
DataRow thisCounty = counties[rand.Next(counties.Count())];
//generate the new patient
HL7.Patient thisPatient = GeneratePatient(patientNumber, practId, thisCounty["State"].ToString(), thisCounty["County"].ToString(), thisCounty["Postal Code"].ToString());
//add to the list
patList.Add(thisPatient);
patientNumber++;
}
}
//generate observations for each patient
foreach (var patient in patList)
{
int obsCount = rand.Next(0, maxObsPerPatient);
for (int i = 0; i < obsCount; i++)
{
HL7.Observation thisObservation = GenerateObservation(observationNumber, patient, i);
obsList.Add(thisObservation);
observationNumber++;
}
}
//generate conditions for each patient
foreach (var patient in patList)
{
double condPct = rand.NextDouble();
if (condPct < conditionProb)
{
HL7.Condition thisCondition = GenerateCondition(conditionNumber, patient);
condList.Add(thisCondition);
conditionNumber++;
}
}
return(new CreatedDataContainer(patList, condList, obsList));
}
