public override bool Equals(object haplogroup)
{
if (!(haplogroup is Haplogroup))
{
return(false);
}
Haplogroup c = (Haplogroup)haplogroup;
if (!this.haplogroup.Equals(c.haplogroup))
{
return(false);
}
return(true);
}
public bool isSuperHaplogroup(Haplogroup hgToCheck)
{
if (!(hgToCheck is Haplogroup))
{
return(false);
}
Haplogroup c = hgToCheck;
if (!c.haplogroup.Contains(this.haplogroup))
{
return(false);
}
return(true);
}
//TODO: This needs to be a method
//private StreamReader PolygeneticWeights {
public void changePoly(Haplogroup hg, Polymorphism polyOld, Polymorphism polyNew)
{
var e = getPolysOfHg(hg);
foreach (XmlNode ce in e)
{
if (ce.InnerText.Equals(polyOld.ToString()))
{
ce.InnerText = polyNew.ToString();
return;
}
}
throw new HaploGrepException("Polymorphism does not exit");
}
public XmlNodeList getPolysOfHg(Haplogroup hg)
{
var titleNode = xmlDoc.SelectSingleNode("//haplogroup[@name=\"" + hg.ToString() + "\"]/details");
return(titleNode.SelectNodes("poly"));
}
