public FormToDisplayTable(DataTable dt, cGlobalInfo GlobalInfo)
{
InitializeComponent();
this.dt = dt;
this.dataGridViewForTable.DataSource = dt;
this.GlobalInfo = GlobalInfo;
}
public FormForSingleCellsDisplay(DataTable dt, cGlobalInfo GlobalInfo)
{
InitializeComponent();
this.dt = dt;
this.GlobalInfo = GlobalInfo;
// this.dataGridViewForTable.DataSource = dt;
}
public FormForManualClustering(cGlobalInfo GlobalInfo)
{
InitializeComponent();
this.GlobalInfo = GlobalInfo;
WellClassSelectionPanel = new PanelForClassSelection(true, eClassType.WELL);
WellClassSelectionPanel.SelectAll();
WellClassSelectionPanel.Height = tabPageWellClasses.Height;
tabPageWellClasses.Controls.Add(WellClassSelectionPanel);
HitClassPanel = new PanelForClassSelection(false, eClassType.WELL);
HitClassPanel.Height = panelForHitClass.Height;
HitClassPanel.UnSelectAll();
HitClassPanel.Select(1);
panelForHitClass.Controls.Add(HitClassPanel);
NonHitClassPanel = new PanelForClassSelection( false, eClassType.WELL);
NonHitClassPanel.Height = panelForNonHitClass.Height;
NonHitClassPanel.UnSelectAll();
NonHitClassPanel.Select(0);
panelForNonHitClass.Controls.Add(NonHitClassPanel);
PlatesSelectionPanel = new PanelForPlatesSelection(true, null, true);
PlatesSelectionPanel.Height = tabPageWellClasses.Height;
PlatesSelectionPanel.Width = tabPageWellClasses.Width;
TabPagePlates.Controls.Add(PlatesSelectionPanel);
}
public FormForClusteringInfo(List<string> ListDescriptors, cGlobalInfo GlobalInfo)
{
InitializeComponent();
this.GlobalInfo = GlobalInfo;
this.treeViewForOptions.SelectedNode = this.treeViewForOptions.Nodes[0];
ListClusteringAlgo = new cListClusteringAlgo(ListDescriptors);
}
public FormForSwapClasses(cGlobalInfo GlobalInfo)
{
InitializeComponent();
comboBoxDestinationClass.SelectedIndex = 0;
comboBoxOriginalClass.SelectedIndex = 0;
this.GlobalInfo = GlobalInfo;
}
public PanelForWellClassesColor(cGlobalInfo GlobalInfo)
{
InitializeComponent();
this.panelForWellClasses.Controls.Add(new PanelForClassEditing(GlobalInfo));
//Controls.Add(new PanelForClassEditing(this));
//panelForCellularPhenotypes.Controls.Add(new PanelForPhenotypeEditing(this));
}
public cDisplayTable(string Title, string[] ColumnNames, List<string[]> Values, cGlobalInfo GlobalInfo, bool IsMINE)
{
this.Text = Title;
this.TableValues = new DataTable();
this.dataGridViewForTable.Columns.Clear();
foreach (string Name in ColumnNames)
{
this.TableValues.Columns.Add(new DataColumn(Name, typeof(string)));
}
//this.TableValues.Columns.Add(new DataColumn("", typeof(string)));
//double[] Mins = new double[IsDisplayColorMap.Count];
//double[] Maxs = new double[IsDisplayColorMap.Count];
//for (int idx = 0; idx < Mins.Length; idx++)
//{
// Mins[idx] = double.MaxValue;
// Maxs[idx] = double.MinValue;
//}
for (int Row = 0; Row < Values.Count; Row++)
{
this.TableValues.Rows.Add();
for (int idxString = 0; idxString < Values[Row].Length; idxString++)
{
string CurrentString = Values[Row][idxString];
this.TableValues.Rows[Row][idxString] = CurrentString;
}
}
this.dataGridViewForTable.DataSource = this.TableValues;
this.Show();
if (IsMINE)
{
cLUT LUT = new cLUT();
for (int Row = 0; Row < Values.Count; Row++)
{
for (int idxString = 0; idxString < Values[Row].Length; idxString++)
{
string CurrentString = Values[Row][idxString];
if ((idxString == 2) || (idxString == 7))
{
int ConvertedValue = (int)((LUT.LUT_GREEN_TO_RED[0].Length - 1) * Math.Abs(double.Parse(CurrentString)));
Color Coul = Color.FromArgb(LUT.LUT_GREEN_TO_RED[0][ConvertedValue], LUT.LUT_GREEN_TO_RED[1][ConvertedValue], LUT.LUT_GREEN_TO_RED[2][ConvertedValue]);
this.dataGridViewForTable.Rows[Row].Cells[idxString].Style.BackColor = Coul;
this.dataGridViewForTable.Rows[Row].Cells[idxString].Style.ForeColor = Color.White;
}
}
}
}
}
public UserControlSingleLUT(cImagePanel CurrentFormForImageDisplay, cSingleChannelImage AssociatedImageBand, int InitialIdx)
{
this.AssociatedImageBand = AssociatedImageBand;
this.CurrentFormForImageDisplay = CurrentFormForImageDisplay;
this.GlobalInfo = CurrentFormForImageDisplay.GlobalInfo;
this.SelectedLUT = ListLUT.LUT_LINEAR;
InitializeComponent();
if (InitialIdx == 0)
{
this.MaxColorForLinear = Color.FromArgb(255, 255, 0, 0);
}
else if (InitialIdx == 1)
{
this.MaxColorForLinear = Color.FromArgb(255, 0, 255, 0);
}
else if (InitialIdx == 2)
{
this.MaxColorForLinear = Color.FromArgb(255, 0, 0, 255);
}
else
{
this.MaxColorForLinear = Color.FromArgb(255, 255, 0, 0);
}
UpDateLinearLUT();
comboBoxForLUT.Text = "Linear ";
UpDateColorSampleImage();
AssociatedImageBand.UpDateMin();
AssociatedImageBand.UpDateMax();
// this.numericUpDownMinValue.ValueChanged -= new EventHandler(numericUpDownMinValue_ValueChanged);
this.numericUpDownMinValue.Value = (decimal)AssociatedImageBand.Min;
this.numericUpDownMinValue.ValueChanged += new EventHandler(numericUpDownMinValue_ValueChanged);
// this.numericUpDownMaxValue.ValueChanged -= new EventHandler(numericUpDownMaxValue_ValueChanged);
this.numericUpDownMaxValue.Value = (decimal)AssociatedImageBand.Max;
this.numericUpDownMaxValue.ValueChanged += new EventHandler(numericUpDownMaxValue_ValueChanged);
this.trackBarOpacity.ValueChanged += new System.EventHandler(this.trackBarOpacity_ValueChanged);
this.checkBoxIsActive.CheckedChanged += new System.EventHandler(this.checkBoxIsActive_CheckedChanged);
this.comboBoxForLUT.SelectedIndexChanged += new System.EventHandler(this.comboBoxForLUT_SelectedIndexChanged);
this.trackBarGamma.ValueChanged += new System.EventHandler(this.trackBarGamma_ValueChanged);
this.comboBoxForLUT.SelectedValueChanged += new System.EventHandler(this.comboBoxForLUT_SelectedValueChanged);
this.pictureBoxForColorSample.DoubleClick += new System.EventHandler(this.pictureBoxForColorSample_DoubleClick);
this.MouseDown += new System.Windows.Forms.MouseEventHandler(this.UserControlSingleLUT_MouseDown);
this.toolStripMenuItemGammaDefault.Click += new System.EventHandler(this.toolStripMenuItemGammaDefault_Click);
this.textBoxForName.TextChanged += new System.EventHandler(this.textBoxForName_TextChanged);
this.BringToFront();
}
public FormForClassificationInfo(cGlobalInfo GlobalInfo)
{
InitializeComponent();
this.GlobalInfo = GlobalInfo;
this.GeneratedKernel = new RBFKernel();
((RBFKernel)this.GeneratedKernel).setGamma(1.0);
ListClassificationAlgo = new cListClassificationAlgo(this);
this.treeViewForOptions.ExpandAll();
this.treeViewForOptions.SelectedNode = this.treeViewForOptions.Nodes[0].Nodes[0];
this.treeViewForOptions.SelectedNode.EnsureVisible(); //scroll if necessary
this.treeViewForOptions.SelectedNode.Checked = true;
// this.treeViewForOptions.Focus();
}
public FormForPanelFilterHits(cGlobalInfo GlobalInfo)
{
InitializeComponent();
foreach (var item in cGlobalInfo.CurrentScreening.ListDescriptors)
{
if (item.IsActive()) this.comboBoxForDescName.Items.Add(item.GetName());
}
foreach (var item in cGlobalInfo.CurrentScreening.ListWellPropertyTypes)
{
this.comboBoxForPropertyName.Items.Add(item.Name);
}
//this.comboBoxForDescName.SelectedText = this.comboBoxForDescName.Items[0].ToString();
}
public PanelForClassEditing(cGlobalInfo GlobalInfo)
{
this.GlobalInfo = GlobalInfo;
this.Changed += new ChangedEventHandler(PanelForClassEditing_Changed);
int NumClass = cGlobalInfo.ListWellClasses.Count;
this.Height = cGlobalInfo.OptionsWindow.panelForWellClasses.Height;
this.AutoScroll = true;
this.MouseDown += new System.Windows.Forms.MouseEventHandler(this.PanelForClassSelection_MouseDown);
ListTextBoxes = new List<System.Windows.Forms.TextBox>();
ListPanelColor = new List<System.Windows.Forms.Panel>();
for (int IdxClass = 0; IdxClass < NumClass; IdxClass++)
{
System.Windows.Forms.Panel PanelForColor = new System.Windows.Forms.Panel();
PanelForColor.Width = 13;
PanelForColor.Height = 13;
PanelForColor.BackColor = cGlobalInfo.ListWellClasses[IdxClass].ColourForDisplay;
PanelForColor.BorderStyle = System.Windows.Forms.BorderStyle.FixedSingle;
PanelForColor.Location = new System.Drawing.Point(5, PanelForColor.Height * IdxClass-2);
PanelForColor.Tag = IdxClass;
PanelForColor.MouseDoubleClick += new System.Windows.Forms.MouseEventHandler(this.MouseDoubleClick);
ListPanelColor.Add(PanelForColor);
System.Windows.Forms.TextBox CurrentTextBox = new System.Windows.Forms.TextBox();
CurrentTextBox.Text = cGlobalInfo.ListWellClasses[IdxClass].Name;// "Class " + IdxClass;
ListToolTips.Add(new System.Windows.Forms.ToolTip());
ListToolTips[IdxClass].SetToolTip(CurrentTextBox, CurrentTextBox.Text);
//System.Windows.Forms.ToolTip TT = new System.Windows.Forms.ToolTip();
//TT.SetToolTip(CurrentTextBox, CurrentTextBox.Text);
CurrentTextBox.Location = new System.Drawing.Point(PanelForColor.Width+15, (CurrentTextBox.Height+5) * IdxClass);
CurrentTextBox.TextChanged += new EventHandler(CurrentTextBox_TextChanged);
CurrentTextBox.Tag = IdxClass;
ListTextBoxes.Add(CurrentTextBox);
PanelForColor.Location = new System.Drawing.Point(5, CurrentTextBox.Location.Y+5);
}
this.Controls.AddRange(ListPanelColor.ToArray());
this.Controls.AddRange(ListTextBoxes.ToArray());
}
public FormForGenerateScreening(cGlobalInfo GlobalInfo)
{
InitializeComponent();
this.GlobalInfo = GlobalInfo;
ToolTip toolTip1 = new ToolTip();
// Set up the delays for the ToolTip.
toolTip1.AutoPopDelay = 5000;
toolTip1.InitialDelay = 1000;
toolTip1.ReshowDelay = 500;
toolTip1.ShowAlways = true;
// Set up the ToolTip text for the Button and Checkbox.
toolTip1.SetToolTip(this.checkBoxStandardDeviation, "Step: " + GlobalInfo.OptionsWindow.numericUpDownGenerateScreenNoiseStdDev.Value);
toolTip1.SetToolTip(this.checkBoxShiftRowEffect, "Step: " + GlobalInfo.OptionsWindow.numericUpDownGenerateScreenRowEffectShift.Value);
toolTip1.SetToolTip(this.checkBoxRatioXY, "Step: " + GlobalInfo.OptionsWindow.numericUpDownGenerateScreenRatioXY.Value);
toolTip1.SetToolTip(this.checkBoxEdgeEffectIteration, "Step: " + GlobalInfo.OptionsWindow.numericUpDownGenerateScreenDiffusion.Value);
}
public FormSingleCellClusteringInfo(cGlobalInfo GlobalInfo)
{
InitializeComponent();
ToolTip toolTip1 = new ToolTip();
// Set up the delays for the ToolTip.
toolTip1.AutoPopDelay = 5000;
toolTip1.InitialDelay = 1000;
toolTip1.ReshowDelay = 500;
toolTip1.ShowAlways = true;
// Set up the ToolTip text for the Button and Checkbox.
toolTip1.SetToolTip(this.labelDescForClass, "Choose a descriptor that contains the class of the objects.");
// toolTip1.SetToolTip(this.labelNeutralClass, "Define (if necessary !) a class value that not be taken into account for the learning process.");
toolTip1.SetToolTip(this.radioButtonAutomated, "The object classes will be evaluated automatically.");
toolTip1.SetToolTip(this.radioButtonDescriptorBased, "One descriptor represents already the object class.");
foreach (var item in GlobalInfo.CheckedListBoxForDescActive.Items)
{
this.comboBoxDescriptorForClass.Items.Add(item);
}
}
public FormForHistogramScreen(cGlobalInfo GlobalInfo)
{
this.GlobalInfo = GlobalInfo;
InitializeComponent();
if (GlobalInfo.CurrentScreen == null) this.checkBoxAddAsDescriptor.Enabled = false;
FormForVariability WindowAveragePop1 = new FormForVariability();
AverageVariabilityWindows.Add(WindowAveragePop1);
FormForVariability WindowAveragePop2 = new FormForVariability();
AverageVariabilityWindows.Add(WindowAveragePop2);
FormForVariability WindowStdevPop1 = new FormForVariability();
StDevVariabilityWindows.Add(WindowStdevPop1);
FormForVariability WindowStdevPop2 = new FormForVariability();
StDevVariabilityWindows.Add(WindowStdevPop2);
FormForVariability WindowEventsPop1 = new FormForVariability();
EventsNumberVariabilityWindows.Add(WindowEventsPop1);
FormForVariability WindowEventsPop2 = new FormForVariability();
EventsNumberVariabilityWindows.Add(WindowEventsPop2);
}
public FormDendogram(cGlobalInfo GlobalInfo)
{
InitializeComponent();
this.GlobalInfo = GlobalInfo;
}
public FormForHierarchical(cGlobalInfo GlobalInfo)
{
InitializeComponent();
this.GlobalInfo = GlobalInfo;
}
public FormForDescFiltering(cGlobalInfo GlobalInfo)
{
InitializeComponent();
this.GlobalInfo = GlobalInfo;
}
private void HCSAnalyzer_Load(object sender, EventArgs e)
{
//System.Threading.Thread thdWorker = new ... (MethodToCall);
// System.Threading.Thread thdWorker = new System.Threading.Thread(MyLoad);
// thdWorker.Start();
GlobalInfo = new cGlobalInfo(this);
panelForTools.Controls.Add(cGlobalInfo.GUIPlateLUT.AssociatedPanel);
this.comboBoxClass.Items.Add("Inactive");
foreach (var item in cGlobalInfo.ListWellClasses)
{
this.comboBoxClass.Items.Add(item.Name);
//this.comboBoxClass.Items[this.comboBoxClass.Items.Count-1].
}
// GlobalInfo.WindowName = this.Text;
this.Text = cGlobalInfo.WindowName + " (Scalar Mode)";
cGlobalInfo.OptionsWindow.Visible = false;
cGlobalInfo.ComboForSelectedDesc = this.comboBoxDescriptorToDisplay;
cGlobalInfo.CheckedListBoxForDescActive = this.checkedListBoxActiveDescriptors;
//new Kitware.VTK.RenderWindowControl novelRender = new RenderWindowControl
cGlobalInfo.renderWindowControlForVTK = null;//renderWindowControlForVTK;
PlateListWindow = new PlatesListForm();
cGlobalInfo.PlateListWindow = PlateListWindow;
cGlobalInfo.panelForPlate = this.panelForPlate;
comboBoxClass.SelectedIndex = 1;
// CheckBox cb = new CheckBox();
//cb.Text = "test";
//cb.CheckStateChanged += (s, ex) =>
//this.Text = cb.CheckState.ToString();
//ToolStripControlHost host = new ToolStripControlHost(cb);
//toolStrip1.Items.Insert(0,host);
// this.toolStripMain.DataBindings.Add("Checked", this.checkBox1, "Checked");
checkBoxDisplayClasses.Text = "Display Class";
checkBoxDisplayClasses.Appearance = Appearance.Button;
checkBoxDisplayClasses.FlatStyle = FlatStyle.Popup;
checkBoxDisplayClasses.CheckedChanged += new EventHandler(checkBoxDisplayClasses_CheckedChanged);
ToolStripControlHost host = new ToolStripControlHost(checkBoxDisplayClasses);
toolStripMain.Items.Insert(0, host);
checkBoxApplyTo_AllPlates.Text = "Apply to all plates";
checkBoxApplyTo_AllPlates.Appearance = Appearance.Button;
checkBoxApplyTo_AllPlates.FlatStyle = FlatStyle.Popup;
checkBoxApplyTo_AllPlates.Checked = true;
checkBoxApplyTo_AllPlates.CheckedChanged += new EventHandler(checkBoxApplyTo_AllPlates_CheckedChanged);
ToolStripControlHost hostcheckBoxApplyTo_AllPlates = new ToolStripControlHost(checkBoxApplyTo_AllPlates);
toolStripMain.Items.Insert(3, hostcheckBoxApplyTo_AllPlates);
ToolStripControlHost Host_TrackBarForZoom = new ToolStripControlHost(XTrackBarForZoom.panel);
statusStripMain.Items.Insert(1, Host_TrackBarForZoom);
// check command line arguments and process them
if (System.Environment.GetCommandLineArgs().Length > 1)
{
List<string> LArg = new List<string>();
int FileMode = 0;
foreach (string arg in System.Environment.GetCommandLineArgs())
{
if (arg.ToLower() == "-todb")
{
FileMode = 1;
}
else
{
LArg.Add(System.Environment.GetCommandLineArgs()[1]);
}
}
if (FileMode == 0)
{
FormForImportExcel CSVFeedBackWindow = LoadCSVAssay(LArg.ToArray(), false);
if (CSVFeedBackWindow == null) return;
if (CSVFeedBackWindow.ShowDialog() != System.Windows.Forms.DialogResult.OK) return;
ProcessOK(CSVFeedBackWindow);
UpdateUIAfterLoading();
return;
}
else if (FileMode == 1)
{
CSVtoDB(LArg[0],",","");
return;
}
}
// delete the current Log file
File.Delete("HCSA.log");
// this.BringToFront();
//MyLoad();
}
public FormForMultivariateScreen(cGlobalInfo GlobalInfo)
{
InitializeComponent();
this.GlobalInfo = GlobalInfo;
UpDateDisplay();
}
private void HCSAnalyzer_Load(object sender, EventArgs e)
{
GlobalInfo = new cGlobalInfo(CompleteScreening, this);
// GlobalInfo.WindowName = this.Text;
this.Text = GlobalInfo.WindowName + String.Format("Version {0}", Assembly.GetExecutingAssembly().GetName().Version.ToString()) + " (Scalar Mode)";
GlobalInfo.OptionsWindow.Visible = false;
GlobalInfo.ComboForSelectedDesc = this.comboBoxDescriptorToDisplay;
GlobalInfo.CheckedListBoxForDescActive = this.checkedListBoxActiveDescriptors;
//new Kitware.VTK.RenderWindowControl novelRender = new RenderWindowControl
GlobalInfo.renderWindowControlForVTK = null;//renderWindowControlForVTK;
MyConsole = new FormConsole();
MyConsole.Visible = false;
PlateListWindow = new PlatesListForm();
GlobalInfo.PlateListWindow = PlateListWindow;
GlobalInfo.panelForPlate = this.panelForPlate;
comboBoxClass.SelectedIndex = 1;
}
public FormForHistogramMode(cGlobalInfo GlobalInfo)
{
InitializeComponent();
this.GlobalInfo = GlobalInfo;
}
private void HCSAnalyzer_Load(object sender, EventArgs e)
{
GlobalInfo = new cGlobalInfo(CompleteScreening);
GlobalInfo.OptionsWindow.Visible = false;
GlobalInfo.ComboForSelectedDesc = this.comboBoxDescriptorToDisplay;
GlobalInfo.CheckedListBoxForDescActive = this.checkedListBoxActiveDescriptors;
//new Kitware.VTK.RenderWindowControl novelRender = new RenderWindowControl
GlobalInfo.renderWindowControlForVTK = null;//renderWindowControlForVTK;
MyConsole = new FormConsole();
MyConsole.Visible = false;
PlateListWindow = new PlatesListForm();
GlobalInfo.PlateListWindow = PlateListWindow;
GlobalInfo.panelForPlate = this.panelForPlate;
comboBoxClass.SelectedIndex = 1;
}
public cOptionCellularPhenotypesColor(string Name, cGlobalInfo GlobalInfo)
: base(Name)
{
PanelForCellularPhenotypesColor PanelForOption = new PanelForCellularPhenotypesColor(GlobalInfo);
this.PanelToDisplay = PanelForOption.panel;
}
public cOptionWellClassesColor(string Name, cGlobalInfo GlobalInfo)
: base(Name)
{
PanelForWellClassesColor PanelForOption = new PanelForWellClassesColor(GlobalInfo);
this.PanelToDisplay = PanelForOption.panel;
}
