private void ToolStripMenuItem_DisplaySerieData(object sender, EventArgs e)
{
if (sender.GetType() != typeof(ToolStripMenuItem)) return;
ToolStripMenuItem TSMI = (ToolStripMenuItem)sender;
if (TSMI.Tag.GetType() != typeof(HitTestResult)) return;
HitTestResult HTR = (HitTestResult)TSMI.Tag;
cExtendedList ELX = new cExtendedList(this.ChartAreas[0].AxisX.Title);
cExtendedList ELY = new cExtendedList(this.ChartAreas[0].AxisY.Title);
cExtendedTable ET = new cExtendedTable();
ET.ListTags = new List<object>();
ET.Name = "Serie [" + HTR.Series.Name + "]";
foreach (var item in HTR.Series.Points)
{
ELX.Add(item.XValue);
ELY.Add(item.YValues[0]);
ET.ListTags.Add(item.Tag);
}
ET.Add(ELX);
ET.Add(ELY);
cDisplayExtendedTable DET = new cDisplayExtendedTable();
DET.SetInputData(ET);
DET.Run();
}
private void sigmoidFittToolStripMenuItem_Click(object sender, EventArgs e)
{
int NumberOfReplicate = 4;
int NumberOfCurves = 30;
int DRCNumberofPoints = 12;
cExtendedTable FullResults = new cExtendedTable();
FullResults.ListRowNames = new List<string>();
double RealEC50 = 0.0001;
int NumberOfDiffEC50 = 20;
int NumberOfSlopes = 100;
// for (int EC50 = 0; EC50 < NumberOfDiffEC50; EC50++)
{
//double TmpSlopeValue = 0.0;
for (int EC50 = 0; EC50 < NumberOfDiffEC50; EC50++)
//for (int SlopeTmp = 0; SlopeTmp < NumberOfSlopes; SlopeTmp++)
{
RealEC50 *= 2;
//TmpSlopeValue += 0.1;
cExtendedList ListPValues = new cExtendedList("EC50 - " + RealEC50/*TmpSlopeValue*/);
cDesignerTab DT = new cDesignerTab();
DT.IsMultiline = false;
cDataGeneratorTitration GT = new cDataGeneratorTitration();
GT.NumberOfPoint = DRCNumberofPoints;
GT.Start = 5;
GT.DilutionFactor = 2;
GT.Run();
Random RND = new Random();
//cExtendedTable EXT = new cExtendedTable();
//EXT.ListRowNames = new List<string>();
//EXT.Name = "Quality fitting Report";
//EXT.Add(new cExtendedList("Noise Level"));
//EXT.Add(new cExtendedList("Original EC50"));
//EXT.Add(new cExtendedList("Estimated EC50"));
//EXT.Add(new cExtendedList("p-Value"));
for (int i = 0; i < NumberOfCurves; i++)
{
cExtendedTable FinalTable = new cExtendedTable();
cDataGeneratorSigmoid DGS = null;
DGS = new cDataGeneratorSigmoid();
DGS.SetInputData(GT.GetOutPut()[0]);
DGS.EC50 = RealEC50;// 0.01;// 1;// 0.1;// Math.Pow((double)10, -2);
DGS.Bottom = 0;
DGS.Top = 100;
DGS.Slope = 2;// TmpSlopeValue;//1;
DGS.Run();
cAddNoise AN = new cAddNoise();
AN.DistributionType = eRandDistributionType.GAUSSIAN;
double NoiseLevel = (i + 1) * 5;
// EXT[0].Add(NoiseLevel);
// EXT[1].Add(DGS.EC50);
#region loop over the replicates
for (int NumReplic = 0; NumReplic < NumberOfReplicate; NumReplic++)
{
//AN.Mean = 0;
//AN.Stdv = 10;
//AN.SetInputData(DGS.GetOutPut());
//AN.Run();
cExtendedList NewL = DGS.GetOutPut()[1];
for (int k = 0; k < NewL.Count; k++)
{
NewL[k] += RND.NextDouble() * NoiseLevel;
}
cExtendedTable TmpTable = new cExtendedTable();
TmpTable.Add(GT.GetOutPut()[0]);
TmpTable.Add(/*AN.GetOutPut()[1]*/NewL);
if (NumReplic >= 1)
{
cMerge M = new cMerge();
M.IsHorizontal = false;
M.SetInputData(TmpTable, FinalTable);
M.Run();
FinalTable = M.GetOutPut();
}
else
FinalTable = new cExtendedTable(TmpTable);
}
#endregion
//cListWell LW = new cListWell(null);
//foreach (cWell item in CompleteScreening.GetCurrentDisplayPlate().ListActiveWells)
//{
// if (item.GetClassIdx() == 0)
// LW.Add(item);
//}
//cExtendedTable ET = LW.GetDescriptorValues(CompleteScreening.ListDescriptors.GetActiveDescriptors(), true);
cCurveForGraph CFG = new cCurveForGraph();
CFG.SetInputData(FinalTable);
CFG.Run();
// compute ANOVA
cANOVA S = new cANOVA();
cExtendedTable NewTable = CFG.ListPtValues.Crop(0, CFG.ListPtValues.Count - 1, 1, CFG.ListPtValues[0].Count - 1);
S.SignificanceThreshold = 1E-11;
S.SetInputData(NewTable);
S.Run();
//cLinearRegression LR = new cLinearRegression();
//LR.SetInputData(FinalTable);
//LR.Run();
cSigmoidFitting SF = new cSigmoidFitting();
SF.SetInputData(FinalTable);
if (SF.Run().IsSucceed == false) continue;
// double Ratio = LR.GetOutPut()[0][LR.GetOutPut().Count - 1] / SF.GetOutPut()[0][SF.GetOutPut().Count - 1];
cExtendedTable Sigmoid = SF.GetFittedRawValues(GT.GetOutPut()[0]);
FinalTable[0] = Sigmoid[1];
cDesignerSplitter DS = new cDesignerSplitter();
////cViewerTableAsRichText VT = new cViewerTableAsRichText();
cViewerTable VT = new cViewerTable();
cExtendedTable TableResults = SF.GetOutPut();
TableResults[0].Add(S.GetOutPut()[0][0]);
ListPValues.Add(S.GetOutPut()[0][0]);
TableResults[0].Add(S.GetOutPut()[0][1]);
TableResults.ListRowNames.Add("p-Value");
TableResults.ListRowNames.Add("Null hyp. rejected?");
VT.SetInputData(TableResults);
VT.DigitNumber = -1;
VT.Run();
cViewerGraph1D VS1 = new cViewerGraph1D();
VS1.SetInputData(new cExtendedTable(Sigmoid[1]));
VS1.AddCurve(CFG);
VS1.Chart.X_AxisValues = Sigmoid[0];//DGS.GetOutPut()[0];
VS1.Chart.IsLogAxis = true;
VS1.Chart.IsLine = true;
VS1.Chart.IsShadow = true;
VS1.Chart.Opacity = 210;
VS1.Chart.LineWidth = 3;
VS1.Chart.LabelAxisX = "Concentration";
VS1.Chart.LabelAxisY = "Readout";
VS1.Chart.XAxisFormatDigitNumber = -1;
VS1.Chart.IsZoomableX = true;
//Classes.Base_Classes.General.cLineVerticalForGraph VLForEC50 = new Classes.Base_Classes.General.cLineVerticalForGraph(SF.GetOutPut()[0][2]);
//VLForEC50.AddText("EC50: " + SF.GetOutPut()[0][2].ToString("e3")/* + "\nError Ratio:" + Ratio.ToString("N4")*/);
//VS1.Chart.ListVerticalLines.Add(VLForEC50);
//VS1.Chart.ArraySeriesInfo = new cSerieInfoDesign[FinalTable.Count];
//EXT[2].Add(SF.GetOutPut()[0][2]);
//EXT[3].Add(S.GetOutPut()[0][0]);
//for (int IdxCurve = 0; IdxCurve < FinalTable.Count; IdxCurve++)
//{
// cSerieInfoDesign TmpSerieInfo = new cSerieInfoDesign();
// TmpSerieInfo.color = Color.FromArgb(100, GlobalInfo.ListCellularPhenotypes[IdxCurve % GlobalInfo.ListCellularPhenotypes.Count].ColourForDisplay);
// TmpSerieInfo.markerStyle = MarkerStyle.Circle;
// VS1.Chart.ArraySeriesInfo[IdxCurve] = TmpSerieInfo;
//}
VS1.Run();
DS.SetInputData(VS1.GetOutPut());
DS.SetInputData(VT.GetOutPut());
DS.Orientation = Orientation.Horizontal;
DS.Title = "Noise Stdev " + NoiseLevel;
DS.Run();
DT.SetInputData(DS.GetOutPut());
// EXT.ListRowNames.Add(DS.Title);
}
DT.Run();
//cDisplayToWindow DTW = new cDisplayToWindow();
//DTW.SetInputData(DT.GetOutPut());
//DTW.Run();
//DTW.Display();
//cDisplayExtendedTable DET = new cDisplayExtendedTable();
//DET.SetInputData(EXT);
//DET.DigitNumber = -1;
//DET.Run();
FullResults.Add(ListPValues);
}
}
cDisplayExtendedTable DET = new cDisplayExtendedTable();
DET.SetInputData(FullResults);
DET.DigitNumber = -1;
DET.Run();
}
void PasteTableFromClipboard()
{
//Clipboard.ContainsData();
string Values = Clipboard.GetText();
if (Values.Length > 0)
{
string[] Sep = new string[1];
Sep[0] = "\r\n";
string[] ListValues = Values.Split(Sep, StringSplitOptions.None);
if (ListValues.Length == 0) return;
// let's compute the table width
Sep[0] = "\t";
string[] subListValues = ListValues[0].Split(Sep, StringSplitOptions.None);
if (subListValues.Length == 0) return;
cExtendedTable ET = new cExtendedTable(subListValues.Length, ListValues.Length - 1, 0);
ET.ListRowNames = new List<string>();
ET.Name = "From Clipboard [" + subListValues.Length.ToString() + "x" + (ListValues.Length - 1).ToString() + "]";
if (subListValues.Length * (ListValues.Length - 1) > 10000)
{
if (MessageBox.Show("The table will contain " + (subListValues.Length * (ListValues.Length - 1)) + " elements.\nDo you want proceed?", "Warning !", MessageBoxButtons.YesNo, MessageBoxIcon.Error) == System.Windows.Forms.DialogResult.No) return;
}
for (int j = 0; j < subListValues.Length; j++)
ET[j].Name = j.ToString();
for (int i = 0; i < ListValues.Length - 1; i++)
{
ET.ListRowNames.Add(i.ToString());
subListValues = ListValues[i].Split(Sep, StringSplitOptions.None);
for (int j = 0; j < subListValues.Length; j++)
{
double Res;
bool IsSuccess = double.TryParse(subListValues[j], out Res);
if (IsSuccess)
ET[j][i] = Res;
else
ET[j][i] = double.NaN;
}
}
cDisplayExtendedTable DET = new cDisplayExtendedTable();
DET.SetInputData(ET);
DET.Run();
}
}
private void ToolStripMenuItem_OperationsSquare(object sender, EventArgs e)
{
cArithmetic_Power CAP = new cArithmetic_Power();
CAP.SetInputData(this.Input);
CAP.Power = 2;
CAP.Run();
cDisplayExtendedTable CDT = new cDisplayExtendedTable();
CDT.SetInputData(CAP.GetOutPut());
CDT.Run();
}
private void _ToolStripMenuItemInfo(object sender, EventArgs e)
{
cExtendedTable ET = this.AssociatedImage.GetPropertyTable();
cDisplayExtendedTable DET = new cDisplayExtendedTable();
DET.SetInputData(ET);
DET.Run();
}
private void TSItemSubPopSelectionDataTableImages(object sender, EventArgs e)
{
ToolStripMenuItem ParentTag = (ToolStripMenuItem)(sender);
List<int> MyList = ((List<int>)(ParentTag.Tag));
cExtendedTable ET = new cExtendedTable(this.InputSimpleData.Count, MyList.Count, 0);
for (int i = 0; i < this.InputSimpleData.Count; i++)
{
ET[i].Name = this.InputSimpleData[i].Name;
}
ET.ListRowNames = new List<string>();
for (int i = 0; i < MyList.Count; i++)
{
ET.ListRowNames.Add(i.ToString());
}
if (this.InputSimpleData.ListTags != null) ET.ListTags = new List<object>();
int IdxPt = 0;
FormForProgress FP = new FormForProgress();
FP.Show();
int MaxProgress = MyList.Count;
FP.progressBar.Maximum = MaxProgress;
foreach (var item in MyList)
{
for (int i = 0; i < this.InputSimpleData.Count; i++)
{
ET[i][IdxPt] = this.InputSimpleData[i][MyList[IdxPt]];
}
if ((this.InputSimpleData.ListTags != null) && (this.InputSimpleData.ListTags[IdxPt] != null))
{
if (this.InputSimpleData.ListTags[MyList[IdxPt]].GetType() == typeof(cSingleBiologicalObject))
{
cSingleBiologicalObject TmpBioObj = ((cSingleBiologicalObject)this.InputSimpleData.ListTags[MyList[IdxPt]]);
List<cImageMetaInfo> ListMeta = cGlobalInfo.ImageAccessor.GetImageInfo(TmpBioObj);
if (ListMeta==null) continue;
cImage Image = new cImage(ListMeta);
TmpBioObj.BD_BoxMax.Z = TmpBioObj.BD_BoxMin.Z = 0;
cImage CroppedImaged = Image.Crop(TmpBioObj.BD_BoxMin, TmpBioObj.BD_BoxMax);
if((cGlobalInfo.TmpImageDisplayProperties==null)||(cGlobalInfo.TmpImageDisplayProperties.ListMin.Count != CroppedImaged.GetNumChannels()))
{
ET.ListTags.Add(CroppedImaged.GetBitmap(1f, null, null));
}
else
{
cImageDisplayProperties IP = cGlobalInfo.TmpImageDisplayProperties;
ET.ListTags.Add(CroppedImaged.GetBitmap(1f, IP, null));
}
FP.richTextBoxForComment.AppendText("Object "+ IdxPt +" / "+MyList.Count +"\n");
}
}
FP.progressBar.Value = IdxPt;
FP.Refresh();
IdxPt++;
}
FP.Close();
ET.Name = "Data Table - " + MyList.Count + " Objects";
cDisplayExtendedTable DET = new cDisplayExtendedTable();
DET.SetInputData(ET);
DET.Run();
//DataPoint DP = new DataPoint();
//if (this.InputSimpleData[0].ListTags != null)
//{
// if (j >= this.InputSimpleData[0].ListTags.Count) continue;
// DP.Tag = this.InputSimpleData[0].ListTags[j];
// // if (DP.Tag.GetType() == typeof(cWell))
// // {
// // DP.Color = ((cWell)(DP.Tag)).GetClassColor();
// // DP.ToolTip = ((cWell)(DP.Tag)).GetShortInfo() + Value[0];
// // }
// if (DP.Tag.GetType() == typeof(cSingleBiologicalObject))
// {
// // DP.Color = ((cSingleBiologicalObject)(DP.Tag)).GetColor();
// // DP.ToolTip = ((cSingleBiologicalObject)(DP.Tag)).GetAssociatedPhenotype().Name + "\nValue: (" + DP.XValue.ToString("N2") + ":" + DP.YValues[0].ToString("N2") + ")";
// }
//}
}
private void ToolStripMenuItem_OperationsAbs(object sender, EventArgs e)
{
cArithmetic_Abs CAA = new cArithmetic_Abs();
CAA.SetInputData(this.Input);
CAA.Run();
cDisplayExtendedTable CDT = new cDisplayExtendedTable();
CDT.SetInputData(CAA.GetOutPut());
CDT.Run();
}
private void ToolStripMenuItem_DistEuclidean(object sender, EventArgs e)
{
cExtendedTable CET = new cExtendedTable();
foreach (DataGridViewColumn item in GridView.SelectedColumns)
CET.Add(Input[item.Index]);
cDistances CD = new cDistances();
CD.DistanceType = eDistances.EUCLIDEAN;
CD.SetInputData(CET);
CD.Run();
cDisplayExtendedTable CDT = new cDisplayExtendedTable();
CDT.SetInputData(CD.GetOutPut());
CDT.Run();
}
private void ToolStripMenuItem_NormMinMax(object sender, EventArgs e)
{
cExtendedTable CET = new cExtendedTable();
foreach (DataGridViewColumn item in GridView.SelectedColumns)
{
CET.Add(Input[item.Index].Normalize(eNormalizationType.MIN_MAX));
}
CET.Name = "Min-Max(" + this.Input.Name + ")";
cDisplayExtendedTable CDT = new cDisplayExtendedTable();
CDT.SetInputData(CET);
CDT.Run();
}
private void ToolStripMenuItem_TestsOneWayANOVA(object sender, EventArgs e)
{
cExtendedTable CET = new cExtendedTable();
foreach (DataGridViewColumn item in GridView.SelectedColumns)
CET.Add(Input[item.Index]);
cANOVA S = new cANOVA();
S.SetInputData(CET);
S.Run();
cDisplayExtendedTable CDT = new cDisplayExtendedTable();
CDT.DigitNumber = -1;
CDT.SetInputData(S.GetOutPut());
CDT.Run();
}
private void ToolStripMenuItem_DescendingSorting(object sender, EventArgs e)
{
if (GridView.SelectedColumns.Count == 0) return;
cSort S = new cSort();
S.SetInputData(this.Input);
S.IsAscending = false;
S.ColumnIndexForSorting = GridView.SelectedColumns[0].Index;
S.Run();
cDisplayExtendedTable CDT = new cDisplayExtendedTable();
CDT.SetInputData(S.GetOutPut());
CDT.Run();
}
private void ToolStripMenuItem_DisplayDataTableDistance(object sender, EventArgs e)
{
cExtendedTable ET = this.ListActiveWells.GetDistanceMatrix(eDistances.EUCLIDEAN);
cDisplayExtendedTable DET = new cDisplayExtendedTable();
DET.SetInputData(ET);
DET.Run();
}
private void ToolStripMenuItem_DisplayDataTable(object sender, EventArgs e)
{
cExtendedTable ET = this.GetAverageValueTable(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor(), true);
//ET = GetListValues(true);
cDisplayExtendedTable DET = new cDisplayExtendedTable();
DET.SetInputData(ET);
DET.Run();
}
private void ToolStripMenuItem_AnalysisDisplayDataTable(object sender, EventArgs e)
{
cDisplayExtendedTable DET = new cDisplayExtendedTable();
DET.SetInputData(this.GetActiveSignatures(false));
DET.DigitNumber = -1;
DET.Run();
}
void DisplayAsDataTable(object sender, EventArgs e)
{
cDisplayExtendedTable DET = new cDisplayExtendedTable();
DET.SetInputData(cGlobalInfo.CurrentScreening.ListDescriptors.GetDataTable());
DET.Run();
}
private void ToolStripMenuItem_NormStandardize(object sender, EventArgs e)
{
cExtendedTable CET = new cExtendedTable();
foreach (DataGridViewColumn item in GridView.SelectedColumns)
CET.Add(Input[item.Index].Normalize(eNormalizationType.STANDARDIZE));
CET.Name = "Standardize(" + this.Input.Name + ")";
cDisplayExtendedTable CDT = new cDisplayExtendedTable();
CDT.SetInputData(CET);
CDT.Run();
}
private void TSItemSubPopSelectionDataTable(object sender, EventArgs e)
{
ToolStripMenuItem ParentTag = (ToolStripMenuItem)(sender);
List<int> MyList = ((List<int>)(ParentTag.Tag));
cExtendedTable ET = new cExtendedTable(this.InputSimpleData.Count, MyList.Count, 0);
for (int i = 0; i < this.InputSimpleData.Count; i++)
{
ET[i].Name = this.InputSimpleData[i].Name;
}
ET.ListRowNames = new List<string>();
for (int i = 0; i < MyList.Count; i++)
{
ET.ListRowNames.Add(i.ToString());
}
int IdxPt = 0;
foreach (var item in MyList)
{
for (int i = 0; i < this.InputSimpleData.Count; i++)
{
ET[i][IdxPt] = this.InputSimpleData[i][MyList[IdxPt]];
}
IdxPt++;
}
ET.Name = "Data Table - " + MyList.Count + " Objects";
cDisplayExtendedTable DET = new cDisplayExtendedTable();
DET.SetInputData(ET);
DET.Run();
}
private void ToolStripMenuItem_OperationsClustering(object sender, EventArgs e)
{
cClustering CC = new cClustering();
cExtendedTable CET = new cExtendedTable();
foreach (DataGridViewColumn item in GridView.SelectedColumns)
CET.Add(Input[item.Index]);
if (this.Input.ListRowNames != null)
{
CET.ListRowNames = new List<string>();
foreach (var item in this.Input.ListRowNames)
CET.ListRowNames.Add(item);
}
if (this.Input.ListTags != null)
{
CET.ListTags = new List<object>();
foreach (var item in this.Input.ListTags)
CET.ListTags.Add(item);
}
CET.Name = "Sub["+this.Input.Name+"]";
CC.SetInputData(CET);
//CC.ListProperties.FindByName("Number of Clusters").SetNewValue((int)3);
//CC.ListProperties.FindByName("Number of Clusters").IsGUIforValue = true;
if (!CC.Run().IsSucceed) return;
cDisplayExtendedTable CDT = new cDisplayExtendedTable();
CDT.SetInputData(CC.GetOutPut());
CDT.Run();
}
private void dataTableToolStripMenuItem_Click(object sender, EventArgs e)
{
cDisplayExtendedTable CDT = new cDisplayExtendedTable();
cExtendedTable ET = new cExtendedTable();
ET.Name = toolStripComboBoxLUT.Text;
ET.ListRowNames = new List<string>();
byte[][] Res= cGlobalInfo.CurrentPlateLUT;
vtkColorTransferFunction TF = vtkColorTransferFunction.New();
// double[] ListValues = {-100.0, -90.0, -80.0, -70.0, -60.000004, -50.0, -40.0, -30.000002, -20.0, 20.0, 30.000002, 40.0, 50.0, 60.000004, 70.0, 80.0, 90.0, 100.0};
for (int i = 0; i < Res[0].Length; i++)
{
TF.AddRGBPoint((double)(255.0*i)/Res[0].Length, Res[0][i] / 255.0, Res[1][i] / 255.0, Res[2][i] / 255.0);
}
TF.Build();
ET.Add(new cExtendedList("Red"));
ET.Add(new cExtendedList("Green"));
ET.Add(new cExtendedList("Blue"));
for (int i = 0; i < 255; i++)
{
double[] Test = TF.GetColor(i);
ET[0].Add((char)(Test[0]*255));
ET[1].Add((char)(Test[1]*255));
ET[2].Add((char)(Test[2]*255));
}
//ET.Add(new cExtendedList("Red"));
//for (int i = 0; i < Res[0].Length; i++)
//{
// ET[0].Add(Res[0][i]);
// ET.ListRowNames.Add(i.ToString());
//}
//ET.Add(new cExtendedList("Green"));
//for (int i = 0; i < Res[1].Length; i++)
// ET[1].Add(Res[1][i]);
//ET.Add(new cExtendedList("Blue"));
//for (int i = 0; i < Res[2].Length; i++)
// ET[2].Add(Res[2][i]);
CDT.SetInputData(ET);
CDT.Run();
}
private void ToolStripMenuItem_OperationsCropSelection(object sender, EventArgs e)
{
int MinX = 0;
int MaxX = 0;
int MinY = 0;
int MaxY = 0;
DataGridViewCell item = GridView.SelectedCells[0];
MinX = MaxX = item.ColumnIndex;
MinY = MaxY = item.RowIndex;
for (int i = 1; i < GridView.SelectedCells.Count; i++)
{
item = GridView.SelectedCells[i];
if (item.ColumnIndex < MinX) MinX = item.ColumnIndex;
if (item.RowIndex < MinY) MinY = item.RowIndex;
if (item.ColumnIndex > MaxX) MaxX = item.ColumnIndex;
if (item.RowIndex > MaxY) MaxY = item.RowIndex;
}
cDisplayExtendedTable CDT = new cDisplayExtendedTable();
CDT.SetInputData(this.Input.Crop(MinX, MaxX, MinY, MaxY));
CDT.Run();
}
private void ToolStripMenuItem_OperationsInverse(object sender, EventArgs e)
{
cInverse CI = new cInverse();
CI.SetInputData(this.Input);
CI.Run();
cDisplayExtendedTable CDT = new cDisplayExtendedTable();
CDT.SetInputData(CI.GetOutPut());
CDT.Run();
}
private void ToolStripMenuItem_Statistics(object sender, EventArgs e)
{
cExtendedTable CET = new cExtendedTable();
foreach (DataGridViewColumn item in GridView.SelectedColumns)
CET.Add(Input[item.Index]);
cStatistics S = new cStatistics();
S.SetInputData(CET);
S.Run();
cDisplayExtendedTable CDT = new cDisplayExtendedTable();
CDT.SetInputData(S.GetOutPut());
CDT.Run();
}
private void ToolStripMenuItem_OperationsStatistics(object sender, EventArgs e)
{
cExtendedTable ET = new cExtendedTable();
ET.Name = " Statistics(" + this.Input.Name + ")";
cLinearize L = new cLinearize();
L.SetInputData(this.Input);
L.Run();
cStatistics S = new cStatistics();
S.SetInputData(L.GetOutPut());
S.Run();
cDisplayExtendedTable CDT = new cDisplayExtendedTable();
CDT.SetInputData(S.GetOutPut());
CDT.Run();
}
private void ToolStripMenuItem_Tests2SamplesTTest(object sender, EventArgs e)
{
cExtendedTable CET = new cExtendedTable();
foreach (DataGridViewColumn item in GridView.SelectedColumns)
CET.Add(Input[item.Index]);
cTwoSampleUnpooledTTest S = new cTwoSampleUnpooledTTest();
S.SetInputData(CET);
S.FTestTails = eFTestTails.BOTH;
S.Run();
cDisplayExtendedTable CDT = new cDisplayExtendedTable();
CDT.DigitNumber = -1;
CDT.SetInputData(S.GetOutPut());
CDT.Run();
}
private void loadExtendedTableToolStripMenuItem_Click(object sender, EventArgs e)
{
cCSVToTable CSVT = new cCSVToTable();
CSVT.IsDisplayUIForFilePath = true;
CSVT.IsContainRowNames = true;
CSVT.IsContainColumnHeaders = true;
CSVT.Run();
cDisplayExtendedTable DT = new Classes.MetaComponents.cDisplayExtendedTable();
DT.SetInputData(CSVT.GetOutPut());
DT.Run();
}
private void DisplayTable(object sender, EventArgs e)
{
cDisplayExtendedTable CDET = new cDisplayExtendedTable();
CDET.SetInputData(this.Input);
CDET.Title = this.Title;
CDET.Run();
}
private void simpleTestToolStripMenuItem_Click(object sender, EventArgs e)
{
Random RNd = new Random();
int NumRow = 8;
double InitialValue = 10;
int NumCol = 12;
cExtendedTable FinalTable = null;
for (int Col = 1; Col <= NumCol; Col++)
{
for (int Repeat = 1; Repeat <= NumRow; Repeat++)
{
cExtendedTable GeneratedTable = new cExtendedTable(1, 1000, InitialValue);
cAddNoise AN = new cAddNoise();
AN.DistributionType = eRandDistributionType.GAUSSIAN;
AN.Mean = 20;// Col*1.2;
AN.Stdv = 0.5 * Col;
AN.SetInputData(GeneratedTable);
AN.Run();
GeneratedTable = AN.GetOutPut();
//for (int i = 0; i < GeneratedTable[0].Count; i++)
//{
// GeneratedTable[0][i] = Col;
// GeneratedTable[1][i] = Repeat;
//}
GeneratedTable.ListRowNames = new List<string>();
for (int i = 0; i < GeneratedTable[0].Count; i++)
{
GeneratedTable.ListRowNames.Add(ConvertPosition(Col, Repeat));
}
if (FinalTable == null)
FinalTable = new cExtendedTable(GeneratedTable);
else
{
cMerge M = new cMerge();
M.IsHorizontal = false;
M.SetInputData(FinalTable, GeneratedTable);
M.Run();
FinalTable = M.GetOutPut();
}
}
}
FinalTable.Name = "generated screen";
FinalTable[0].Name = "Volume";
// FinalTable[1].Name = "Row";
// FinalTable[2].Name = "Volume";
cDisplayExtendedTable DET = new cDisplayExtendedTable();
//DET.SetInputData(FinalTable);
//DET.Run();
cTableToFile TTF = new cTableToFile();
TTF.SetInputData(FinalTable);
TTF.IsDisplayUIForFilePath = true;
TTF.IsRunEXCEL = true;
TTF.IsAppend = false;
TTF.Run();
}
private void ToolStripMenuItem_DisplayDataTable(object sender, EventArgs e)
{
if (GlobalInfo == null) return;
cListWells ListWellsToProcess = new cListWells(null);
for (int i = 0; i < cGlobalInfo.ListWellClasses.Count; i++)
{
if (cGlobalInfo.ListWellClasses[i].Name == this.Name)
{
Idx = i;
break;
}
}
if (Idx == -1) return;
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() == Idx) ListWellsToProcess.Add(item);
cExtendedTable DataFromPlate = new cExtendedTable(ListWellsToProcess, true);
DataFromPlate.Name = this.Name + " : " + ListWellsToProcess.Count + " wells";
DataFromPlate.ListRowNames.Clear();
foreach (var item in ListWellsToProcess)
{
DataFromPlate.ListRowNames.Add(item.GetShortInfo());
}
cDisplayExtendedTable DEXT = new cDisplayExtendedTable();
DEXT.SetInputData(DataFromPlate);
DEXT.Run();
}
private void createAveragePlateToolStripMenuItem_Click(object sender, EventArgs e)
{
FormForPlateAveraging FFPA = new FormForPlateAveraging();
PanelForPlatesSelection PlatesSelectionPanel = new PanelForPlatesSelection(true, null, true);
PlatesSelectionPanel.Height = FFPA.panelForPlateList.Height;
FFPA.panelForPlateList.Controls.Add(PlatesSelectionPanel);
if (FFPA.ShowDialog() != System.Windows.Forms.DialogResult.OK) return;
cListPlates LP = PlatesSelectionPanel.GetListSelectedPlates();
cPlate NewPlate = new cPlate("Average Plate", cGlobalInfo.CurrentScreening);
cWell TmpWell;
#region QC report
cExtendedList TmpReportForQuality = new cExtendedList("Weight");
TmpReportForQuality.ListTags = new List<object>();
cExtendedTable TableForQCReport = new cExtendedTable(TmpReportForQuality);
TableForQCReport.ListRowNames = new List<string>();
TableForQCReport.ListTags = new List<object>();
foreach (cPlate TmpPlate in LP)
{
object QualityValue = TmpPlate.ListProperties.FindValueByName("Quality");
if ((QualityValue != null) && (FFPA.checkBoxWeightedSum.Checked))
TableForQCReport[0].Add((double)QualityValue);
else
{
this.richTextBoxConsole.AppendText(TmpPlate.GetName() + " - Quality is NULL. Weight set to 1.\n");
TableForQCReport[0].Add(1);
}
TableForQCReport.ListRowNames.Add(TmpPlate.GetName());
TableForQCReport.ListTags.Add(TmpPlate);
TableForQCReport[0].ListTags.Add(TmpPlate);
}
cDisplayExtendedTable DET = new cDisplayExtendedTable();
DET.SetInputData(TableForQCReport);
DET.Title = "QC report";
TableForQCReport.Name = "QC report";
DET.Run();
#endregion
for (int X = 0; X < cGlobalInfo.CurrentScreening.Columns; X++)
for (int Y = 0; Y < cGlobalInfo.CurrentScreening.Rows; Y++)
{
cListSignature LDesc = new cListSignature();
for (int i = 0; i < cGlobalInfo.CurrentScreening.ListDescriptors.Count; i++)
{
double Value = 0;
double NormFactor = 0;
foreach (cPlate TmpPlate in LP)
{
double Weight = 1;
object QualityValue = TmpPlate.ListProperties.FindValueByName("Quality");
if ((QualityValue != null) && (FFPA.checkBoxWeightedSum.Checked))
Weight = (double)QualityValue;
NormFactor += Weight;
TmpWell = TmpPlate.GetWell(X, Y, false);
if (TmpWell != null)
{
Value += Weight * TmpWell.ListSignatures[i].GetValue();
}
}
if (NormFactor > 0)
{
cSignature Desc = new cSignature(Value / NormFactor, cGlobalInfo.CurrentScreening.ListDescriptors[i], cGlobalInfo.CurrentScreening);
LDesc.Add(Desc);
}
}
cWell NewWell = new cWell(LDesc, X + 1, Y + 1, cGlobalInfo.CurrentScreening, NewPlate);
NewWell.SetCpdName("Average Well [" + (X + 1) + ":" + (Y + 1) + "]");
NewPlate.AddWell(NewWell);
}
cGlobalInfo.CurrentScreening.AddPlate(NewPlate);
cGlobalInfo.CurrentScreening.ListPlatesActive.Add(NewPlate);
toolStripcomboBoxPlateList.Items.Add(NewPlate.GetName());
cGlobalInfo.CurrentScreening.ListPlatesActive[cGlobalInfo.CurrentScreening.ListPlatesActive.Count - 1].UpDataMinMax();
cGlobalInfo.CurrentScreening.CurrentDisplayPlateIdx = 0;
cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().DisplayDistribution(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor(), true);
}
private void ToolStripMenuItem_DisplayDataTable(object sender, EventArgs e)
{
cDisplayExtendedTable CDE = new cDisplayExtendedTable();
CDE.SetInputData(this.InputSimpleData);
CDE.Run();
}
