private void GenerateGraph()
{
MyWorld.BackGroundColor = Color.Orange;// GhostWhite;
cViewer3D V3D = new cViewer3D();
V3D.SetInputData(MyWorld);
V3D.Run();
//// get a reference to the renderwindow of our renderWindowControl1
//vtkRenderWindow RenderWindow = renderWindowControl1.RenderWindow;
//// get a reference to the renderer
//vtkRenderer Renderer = RenderWindow.GetRenderers().GetFirstRenderer();
//int IdxItem = 0;
//c3DSphere NewSPhere = new c3DSphere(new cPoint3D(0, 0, 0), 10);
////Renderer.AddActor(NewSPhere.
////foreach (var item in ListVTKData)
////{
//// vtkImageActor imageActor = vtkImageActor.New();
//// imageActor.SetInput(item);
//// imageActor.SetPosition(item.GetDimensions()[0] * (IdxItem++), 0, 0);
//// Renderer.AddActor2D(imageActor);
////}
////if ((this.InputVolume != null) && (this.InputVolume.vtk_volume != null))
////{
//// Renderer.AddVolume(this.InputVolume.vtk_volume);
////}
//Renderer.SetBackground(0.3, 0.3, 0.3);
//Renderer.ResetCamera();
}
private void AnalyseSequence(cImage SeqToAnalyse)
{
// //FormForThumbnails WindThumbnail = new FormForThumbnails();
// //for (int k = 0; k < ListFormForControl.Count; k++)
// //{
// // FormForControl Obj = ListFormForControl.ElementAt(ListFormForControl.Count - k-1);
// // Obj.DisplayThumbnail(WindThumbnail);
// //}
// //WindThumbnail.Show();
// //return;
#region initialization
if (SeqToAnalyse == null) return;
// create World
if (Current3DWorld == null)
{
Current3DWorld = new c3DNewWorld(new cPoint3D(SeqToAnalyse.Width, SeqToAnalyse.Height, SeqToAnalyse.Depth),
new cPoint3D(SeqToAnalyse.Resolution));
}
else
{
// // Current3DWorld.ren1.
// Current3DWorld.Terminate();
Current3DWorld = null;
Current3DWorld = new c3DNewWorld(new cPoint3D(SeqToAnalyse.Width, SeqToAnalyse.Height, SeqToAnalyse.Depth),
new cPoint3D(SeqToAnalyse.Resolution));
}
for (int k = 0; k < ListFormForControl.Count; k++)
{
FormForControl Obj = ListFormForControl.ElementAt(ListFormForControl.Count - k-1);
if (Obj.numericUpDownChannel.Value >= SeqToAnalyse.GetNumChannels())
{
MessageBox.Show("Wrong number of channels", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
}
// // Current3DWorld.ListObjControl = ListFormForControl;
// // dataGridViewForClassif.DataSource = CurrentTable;
// if (DataGrid == null)
// {
// DataGrid = new FormForDataGridView();
// DataGrid.Show();
// }
// Current3DWorld.SetLinkToDataGridView(DataGrid.dataGridViewForResults);
Current3DWorld.ListMetaObjectList = new List<cMetaBiologicalObjectList>();
cMetaBiologicalObjectList ListMetacells = new cMetaBiologicalObjectList("List Meta Objects");
Current3DWorld.ListMetaObjectList.Add(ListMetacells);
#endregion
#region Detection
for (int k = 0; k < ListFormForControl.Count; k++)
{
FormForControl Obj = ListFormForControl.ElementAt(ListFormForControl.Count - k -1);
if (Obj.radioButtonIsVolume.Checked) // we have to detect a volume !
{
cVolumeDetection Detection = new cVolumeDetection(SeqToAnalyse, (int)Obj.numericUpDownChannel.Value, Obj.WindowForVolumeDetection.checkBoxIsBorderKill.Checked);
Detection.SetShift(new cPoint3D((float)Obj.WindowForPreProcessing.numericUpDownShiftX.Value, (float)Obj.WindowForPreProcessing.numericUpDownShiftY.Value, (float)Obj.WindowForPreProcessing.numericUpDownShiftZ.Value));
if ((Obj.checkBoxPreProcessings.Checked == false) || (Obj.WindowForPreProcessing.checkBoxMedianIsDisabled.Checked))
{
Detection.SetMedian(-1);
Detection.SetShift(new cPoint3D(0, 0, 0));
}
else
{
Detection.SetMedian((int)Obj.WindowForPreProcessing.numericUpDownMedianKernel.Value);
Detection.SetShift(new cPoint3D((float)Obj.WindowForPreProcessing.numericUpDownShiftX.Value, (float)Obj.WindowForPreProcessing.numericUpDownShiftY.Value, (float)Obj.WindowForPreProcessing.numericUpDownShiftZ.Value));
}
if (Obj.WindowForVolumeDetection.checkBoxVolumeSmooth.Checked)
Detection.MeshSmoother = new cMeshSmoother((int)Obj.WindowForVolumeDetection.numericUpDownSmoothIterations.Value);
if ((Obj.comboBoxContainer.SelectedItem !=null) && (Obj.comboBoxContainer.SelectedItem.ToString() != ""))
{
Detection.SetContainers(Current3DWorld.GetListBiologicalObjectsOfType(Obj.comboBoxContainer.Items[0].ToString()));
if (Obj.InOrOut.radioButtonIn.Checked) Detection.SetContainersMode(0);
else Detection.SetContainersMode(1);
}
else
Detection.SetContainers(null);
if (Obj.WindowForVolumeDetection.checkBoxIsRegionGrowing.Checked == false) // no region growing direct detection
{
Obj.AssociatedBiologicalObjectList = Detection.IntensityThreshold((float)Obj.WindowForVolumeDetection.numericUpDownIntensityThreshold.Value,
(float)Obj.WindowForVolumeDetection.numericUpDownVolumeMinVol.Value,
(float)Obj.WindowForVolumeDetection.numericUpDownVolumeMaxVol.Value);
}
else // region growing
{
if (Obj.WindowForVolumeDetection.radioButtonRegionsBased.Checked) // start from a segmentation
{
if (Obj.WindowForVolumeDetection.radioButtonVolumeDetectionNew.Checked) // a new segmentation has to be performed
{
// // Image3D CurrentPatch = new Image3D(2 * Radius, 2 * Radius, 1, CurrentImageToProcess.NumBands);
cImage CurrentBinary = new cImage(SeqToAnalyse.Width, SeqToAnalyse.Height, SeqToAnalyse.Depth, 1);
for (int i = 0; i < CurrentBinary.ImageSize; i++)
{
if (SeqToAnalyse.SingleChannelImage[(int)Obj.numericUpDownChannel.Value].Data[i] >= (float)Obj.WindowForVolumeDetection.numericUpDownIntensityThreshold.Value)
CurrentBinary.SingleChannelImage[0].Data[i] = 1;
}
eConnectivity CurrentConnectivity = eConnectivity.TWOD_4;
if (CurrentBinary.Depth > 1)
CurrentConnectivity = eConnectivity.THREED_6;
ConnectedComponentSet OFNucleus = new ConnectedComponentSet(CurrentBinary, null, null, 0, CurrentConnectivity, (int)Obj.WindowForVolumeDetection.numericUpDownRegionBasedMinArea.Value, (int)Obj.WindowForVolumeDetection.numericUpDownRegionBasedMaxArea.Value);
// // RegionGrowing = new cRegionGrowing(OFNucleus, NewSeq[0], (int)numericUpDownChannelForRegionGrowing.Value, (float)numericUpDownIntensityForRegionGrowing.Value, (int)numericUpDownMaxNucleusArea.Value);
int NumIterations = -1;
if (Obj.WindowForVolumeDetection.checkBoxIsConvergence.Checked == false) NumIterations = (int)Obj.WindowForVolumeDetection.numericUpDownIterationNumber.Value;
float MergingRatio = (float)((Obj.WindowForVolumeDetection.trackBarMergingStrength.Maximum - Obj.WindowForVolumeDetection.trackBarMergingStrength.Value) / 100.0);
Obj.AssociatedBiologicalObjectList = Detection.RegionGrowing(OFNucleus,
(float)Obj.WindowForVolumeDetection.numericUpDownIntensityForRegionGrowing.Value,
(float)Obj.WindowForVolumeDetection.numericUpDownVolumeMinVol.Value,
(float)Obj.WindowForVolumeDetection.numericUpDownVolumeMaxVol.Value, NumIterations, MergingRatio);
}
// else
// {
// throw new System.ArgumentException("Not implemented", "Error");
// }
// }
// else // start from seeds points
// {
// // first gather the seeds
// if (Obj.WindowForVolumeDetection.comboBoxExistingSpotsDetected.Items.Count == 0) break;
// List<cBiological3DObject> ListSeeds = Current3DWorld.GetListBiologicalObjectsOfType(Obj.WindowForVolumeDetection.comboBoxExistingSpotsDetected.Items[0].ToString());
// int NumIterations = -1;
// if (Obj.WindowForVolumeDetection.checkBoxIsConvergence.Checked == false) NumIterations = (int)Obj.WindowForVolumeDetection.numericUpDownIterationNumber.Value;
// float MergingRatio = (float)((Obj.WindowForVolumeDetection.trackBarMergingStrength.Maximum - Obj.WindowForVolumeDetection.trackBarMergingStrength.Value) / 100.0);
// Obj.AssociatedBiologicalObjectList = Detection.RegionGrowing(ListSeeds,
// (float)Obj.WindowForVolumeDetection.numericUpDownIntensityForRegionGrowing.Value,
// (float)Obj.WindowForVolumeDetection.numericUpDownVolumeMinVol.Value,
// (float)Obj.WindowForVolumeDetection.numericUpDownVolumeMaxVol.Value, NumIterations, MergingRatio);
}
}
if (Obj.AssociatedBiologicalObjectList != null)
{
Obj.richTextBoxInfo.AppendText(Obj.AssociatedBiologicalObjectList.Count + " objects detected.");
for (int i = 0; i < Obj.AssociatedBiologicalObjectList.Count; i++)
{
cBiological3DVolume TmpVol = (cBiological3DVolume)Obj.AssociatedBiologicalObjectList[i];
Obj.AssociatedBiologicalObjectList[i].SetType(Obj.textBoxName.Text);
// TmpVol.ThumbnailnewImage = imageListForThumbnail.Images[Obj.AssociatedBiologicalObjectList[i].GetType() + ".jpg"];
Obj.AssociatedBiologicalObjectList[i].Name = Obj.textBoxName.Text + " " + i;
// Obj.AssociatedBiologicalObjectList[i].IsMaster = Obj.IsMasterObject();
// List<double> Res = TmpVol.Information.GetInformation();
if (Obj.checkBoxIsDisplayName.Checked)
{
cGeometric3DObject AssociatedText = TmpVol.AttachText(TmpVol.Name, 10, Color.White);
AssociatedText.IsStayInFrontOfCamera = true;
Current3DWorld.AddGeometric3DObject(AssociatedText);
// TmpVol.AddText(TmpVol.Name, Current3DWorld, (double)Obj.ForText.numericUpDownArrowScale.Value, Obj.ForText.buttonChangeColorPositive.BackColor);
}
if (Obj.checkIsBoxPointingArrow.Checked)
{
cGeometric3DObject AssociatedArrow = TmpVol.AttachPointingArrow((double)Obj.ForArrow.numericUpDownArrowScale.Value,
Obj.ForArrow.buttonChangeColorPositive.BackColor);
Current3DWorld.AddGeometric3DObject(AssociatedArrow);
}
Obj.AssociatedBiologicalObjectList[i].SetOpacity((double)Obj.ColorOpacity.numericUpDownValue.Value);
// if the object it the Master then create a meta-object and put it inside
if (Obj.IsMasterObject())
{
cMetaBiologicalObject Cell = new cMetaBiologicalObject(Obj.WindowForMaster.textBoxName.Text + i, Current3DWorld.ListMetaObjectList[0], Obj.AssociatedBiologicalObjectList[i]);
// // Cell.AddObject(Obj.AssociatedBiologicalObjectList[i]);
Current3DWorld.ListMetaObjectList[0].Add(Cell);
}
}
if (Obj.radioButtonColorSingle.Checked)
Current3DWorld.AddBiological3DObjects(Obj.AssociatedBiologicalObjectList, Obj.buttonChangeColorPositive.BackColor, eColorMode.Regular);
else if (Obj.radioButtonColorRandom.Checked)
Current3DWorld.AddBiological3DObjects(Obj.AssociatedBiologicalObjectList, Obj.buttonChangeColorPositive.BackColor, eColorMode.Random);
else if (Obj.radioButtonColorIndexed.Checked)
Current3DWorld.AddBiological3DObjects(Obj.AssociatedBiologicalObjectList, Obj.buttonChangeColorPositive.BackColor, eColorMode.Indexed);
}
}
else if (Obj.RadioButtonIsSpot.Checked)
{
cSpotDetection Detection = new cSpotDetection(SeqToAnalyse, (int)Obj.numericUpDownChannel.Value);
if ((Obj.checkBoxPreProcessings.Checked == false) || (Obj.WindowForPreProcessing.checkBoxMedianIsDisabled.Checked))
{
Detection.SetMedian(-1);
Detection.SetShift(new cPoint3D(0, 0, 0));
}
else
{
Detection.SetMedian((int)Obj.WindowForPreProcessing.numericUpDownMedianKernel.Value);
Detection.SetShift(new cPoint3D((float)Obj.WindowForPreProcessing.numericUpDownShiftX.Value, (float)Obj.WindowForPreProcessing.numericUpDownShiftY.Value, (float)Obj.WindowForPreProcessing.numericUpDownShiftZ.Value));
}
if ((Obj.comboBoxContainer.Items.Count > 0) && (Obj.comboBoxContainer.SelectedItem != null))
{
Detection.SetContainers(Current3DWorld.GetListBiologicalObjectsOfType(Obj.comboBoxContainer.SelectedItem.ToString()));
if (Obj.InOrOut.radioButtonIn.Checked) Detection.SetContainersMode(0);
else Detection.SetContainersMode(1);
}
Obj.AssociatedBiologicalObjectList = Detection.HessianDetection((float)Obj.WindowForSpotDetection.numericUpDownSpotRadius.Value,
(float)Obj.WindowForSpotDetection.numericUpDownIntensityThreshold.Value,
(int)Obj.WindowForSpotDetection.numericUpDownSpotLocality.Value,
(double)Obj.WindowForSpotDetection.numericUpDownSphereDisplayRadius.Value);
Obj.richTextBoxInfo.AppendText(Obj.AssociatedBiologicalObjectList.Count + " objects detected.");
for (int i = 0; i < Obj.AssociatedBiologicalObjectList.Count; i++)
{
cBiologicalSpot TmpSpot = (cBiologicalSpot)Obj.AssociatedBiologicalObjectList[i];
TmpSpot.Name = Obj.textBoxName.Text + " " + i;
TmpSpot.SetType(Obj.textBoxName.Text);
// TmpSpot.ThumbnailnewImage = imageListForThumbnail.Images[Obj.AssociatedBiologicalObjectList[i].GetType() + ".jpg"];
// if (Obj.checkBoxIsDisplayName.Checked)
// TmpSpot.AddText(TmpSpot.Name, Current3DWorld, (double)Obj.ForText.numericUpDownArrowScale.Value, Obj.ForText.buttonChangeColorPositive.BackColor);
if (Obj.checkIsBoxPointingArrow.Checked)
{
cGeometric3DObject AssociatedArrow = TmpSpot.AttachPointingArrow((double)Obj.ForArrow.numericUpDownArrowScale.Value, Obj.ForArrow.buttonChangeColorPositive.BackColor);
Current3DWorld.AddGeometric3DObject(AssociatedArrow);
}
// TmpSpot.SetOpacity((double)Obj.ColorOpacity.numericUpDownValue.Value);
// // if the object it the Master then create a meta-object and put it inside
if (Obj.IsMasterObject())
{
cMetaBiologicalObject Cell = new cMetaBiologicalObject("Cell " + i, Current3DWorld.ListMetaObjectList[0], Obj.AssociatedBiologicalObjectList[i]);
// // Cell.AddObject(Obj.AssociatedBiologicalObjectList[i]);
Current3DWorld.ListMetaObjectList[0].Add(Cell);
}
// /*cMetaBiologicalObject Cell = */
// //Current3DWorld.ListMetaObjectList[0].AssociateWith(Current3DWorld.ListMetaObjectList[0].FindTheClosestVolumeFrom(TmpSpot.GetCentroid(), 20), TmpSpot);
}
// if (Obj.radioButtonColorSingle.Checked)
// Current3DWorld.AddBiological3DObjects(Obj.AssociatedBiologicalObjectList, Obj.buttonChangeColorPositive.BackColor, eColorMode.Regular);
// else if (Obj.radioButtonColorRandom.Checked)
// Current3DWorld.AddBiological3DObjects(Obj.AssociatedBiologicalObjectList, Obj.buttonChangeColorPositive.BackColor, eColorMode.Random);
// else if (Obj.radioButtonColorIndexed.Checked)
// Current3DWorld.AddBiological3DObjects(Obj.AssociatedBiologicalObjectList, Obj.buttonChangeColorPositive.BackColor, eColorMode.Indexed);
}
else if (Obj.radioButtonIsVolumeRendering.Checked)
{
Current3DWorld.AddVolume3D(new cVolumeRendering3D(this.AssociatedImage.SingleChannelImage[(int)Obj.numericUpDownChannel.Value],
new cPoint3D((float)Obj.WindowForPreProcessing.numericUpDownShiftX.Value, (float)Obj.WindowForPreProcessing.numericUpDownShiftY.Value, (float)Obj.WindowForPreProcessing.numericUpDownShiftZ.Value),
null, Current3DWorld));
// cVolume3D Volume = new cVolume3D(SeqToAnalyse, (int)Obj.numericUpDownChannel.Value, new cPoint3D((float)Obj.WindowForPreProcessing.numericUpDownShiftX.Value, (float)Obj.WindowForPreProcessing.numericUpDownShiftY.Value, (float)Obj.WindowForPreProcessing.numericUpDownShiftZ.Value));
// Current3DWorld.AddVolume3D(Volume, Color.Black, Obj.buttonChangeColorPositive.BackColor);
}
// Thread oThread = new Thread(new ThreadStart(Obj.DisplayDone));
}
#endregion
#region Objects Association
cMetaBiologicalObjectList MetaCellList = Current3DWorld.ListMetaObjectList[0];
// let's associate the objects
for (int k = 0; k < ListFormForControl.Count; k++)
{
FormForControl Obj = ListFormForControl.ElementAt(ListFormForControl.Count - k -1);
// that's a volume rendering ... no connection
if (Obj.radioButtonIsVolumeRendering.Checked) continue;
// the object is the master
if (Obj.IsMasterObject()) continue;
// this object has not connections ... is not associated to the master
if (Obj.comboBoxLinkToTheMaster.SelectedIndex == 0) continue;
cPoint3D ClosestPt = new cPoint3D(0, 0, 0);
foreach (cBiological3DVolume CurrentSubObj in Obj.AssociatedBiologicalObjectList)
{
cBiological3DVolume ObjectToIdentify = null;
switch (Obj.comboBoxLinkToTheMaster.SelectedIndex)
{
case 1: // association by distance to the master centroid
ObjectToIdentify = MetaCellList.FindTheClosestVolumeCentroidFrom(CurrentSubObj.GetCentroid(), (double)Obj.WindowDistanceToMaster.numericUpDownDistanceMaxToMaster.Value);
break;
case 2:
// //cBiological3DVolume CurrentVolume
ObjectToIdentify = MetaCellList.FindTheClosestVolumeFrom(CurrentSubObj, (double)Obj.WindowDistanceToMaster.numericUpDownDistanceMaxToMaster.Value, out ClosestPt);
break;
default:
break;
}
if (ObjectToIdentify == null) continue;
cMetaBiologicalObject Cell = MetaCellList.AssociateWith(ObjectToIdentify, CurrentSubObj);
// // -------------- draw information and links between the objects ---------------------
if (Obj.WindowDistanceToMaster.checkBoxDrawLinkToMasterCenter.Checked)
{
c3DLine CurrLine = new c3DLine(CurrentSubObj.GetCentroid(), ObjectToIdentify.GetCentroid());
Current3DWorld.AddGeometric3DObject(CurrLine);
//if (Obj.WindowDistanceToMaster.checkBoxDisplayBranchToCenterDistance.Checked)
// CurrLine.DisplayLenght(Current3DWorld, 0.4);
}
// // -------------- draw information and links between the objects ---------------------
if (Obj.WindowDistanceToMaster.checkBoxDrawLinkToMasterEdges.Checked)
{
c3DLine CurrLine1 = new c3DLine(CurrentSubObj.GetCentroid(), ClosestPt);
Current3DWorld.AddGeometric3DObject(CurrLine1);
//if(Obj.WindowDistanceToMaster.checkBoxDisplayBranchToEdgesDistance.Checked)
// CurrLine1.DisplayLenght(Current3DWorld, 0.4);
}
}
}
#endregion
#region Post Processings
for (int k = 0; k < ListFormForControl.Count; k++)
{
FormForControl Obj = ListFormForControl.ElementAt(ListFormForControl.Count - k - 1);
// the object is the master
// // if (!Obj.IsMasterObject()) continue;
if (!Obj.WindowForMaster.checkBoxDrawAssociatedDelaunay.Checked) continue;
foreach (cMetaBiologicalObject CurrentMeta in MetaCellList)
{
Current3DWorld.AddGeometric3DObject(CurrentMeta.GenerateDelaunay(2.0f,true));
}
}
if (PostProcessWindow.checkBoxRemoveUnAssociatedObjects.Checked)
{
int RemovedObjects = Current3DWorld.RemoveNonAssociatedObjects();
Console.WriteLine(RemovedObjects + " objects removed.");
}
// if (PostProcessWindow.checkBoxExportMetaObjectSignatures.Checked)
// {
// if (CurrentTable == null)
// {
// CurrentTable = new DataTable();
// if (CurrentExperiment == null)
// CurrentTable.Columns.Add(new DataColumn("Image Idx", typeof(int)));
// else
// {
// CurrentTable.Columns.Add(new DataColumn("Image Col.", typeof(int)));
// CurrentTable.Columns.Add(new DataColumn("Image Row", typeof(int)));
// }
// CurrentTable.Columns.Add(new DataColumn("Meta Object Name", typeof(string)));
// foreach (string DescName in MetaCellList[0].GetSignatureNames())
// CurrentTable.Columns.Add(new DataColumn(DescName, typeof(double)));
// CurrentTable.Columns.Add(new DataColumn("Class", typeof(double)));
// }
// foreach (cMetaBiologicalObject CurrentMeta in MetaCellList)
// {
// List<double> CurrentSignature = CurrentMeta.GetSignature();
// CurrentTable.Rows.Add();
// if (CurrentExperiment == null)
// {
// CurrentTable.Rows[CurrentTable.Rows.Count - 1][0] = IdxImageProcessed;
// CurrentTable.Rows[CurrentTable.Rows.Count - 1][1] = CurrentMeta.Name;
// for (int Idx = 0; Idx < CurrentSignature.Count; Idx++)
// CurrentTable.Rows[CurrentTable.Rows.Count - 1][Idx + 2] = CurrentSignature[Idx];
// }
// else
// {
// CurrentTable.Rows[CurrentTable.Rows.Count - 1][0] = CurrentExperiment.Column;
// CurrentTable.Rows[CurrentTable.Rows.Count - 1][1] = CurrentExperiment.Row;
// CurrentTable.Rows[CurrentTable.Rows.Count - 1][2] = CurrentMeta.Name;
// for (int Idx = 0; Idx < CurrentSignature.Count; Idx++)
// CurrentTable.Rows[CurrentTable.Rows.Count - 1][Idx + 3] = CurrentSignature[Idx];
// }
// // Current3DWorld.CopyMetaObjectSignatureToTable(CurrentMeta, 0);
// }
// if (DataGrid != null)
// {
// DataGrid.dataGridViewForResults.DataSource = CurrentTable;
// DataGrid.Update();
// IdxImageProcessed++;
// }
// }
#endregion
// //CurrentTable = new DataTable();
// if (CurrentExperiment == null)
// {
// if (PostProcessWindow.checkBoxDisplayBottomPlate.Checked) Current3DWorld.DisplayBottom(Color.FromArgb(255, 255, 255));
// Current3DWorld.SetBackgroundColor(PostProcessWindow.buttonChangeColorPositive.BackColor);
// Current3DWorld.Render();
// }
// // Current3DWorld.SetLinkToDataGridView(dataGridViewForClassif);
cViewer3D V3D = new cViewer3D();
V3D.SetInputData(Current3DWorld);
V3D.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(V3D.GetOutPut());
DTW.Run();
DTW.Display();
}
private void basic3DToolStripMenuItem_Click(object sender, EventArgs e)
{
cViewer3D V3D = new cViewer3D();
c3DNewWorld MyWorld = new c3DNewWorld(new cPoint3D(1, 1, 1), new cPoint3D(1, 1, 1));
c3DTexturedPlan Plan = new c3DTexturedPlan(new cPoint3D(0, 0, 0), new cImage(256, 256, 1, 1));
Plan.Run();
MyWorld.AddGeometric3DObject(Plan);
V3D.SetInputData(MyWorld);
V3D.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(V3D.GetOutPut());
DTW.Run();
DTW.Display();
}
private void spiralToolStripMenuItem_Click(object sender, EventArgs e)
{
// first let's define all the stimuli
#region Build the stimuli
cStimuli ListCellStimuli = new cStimuli();
cStimulus_Physical Gravity = new cStimulus_Physical("Gravity");
ListCellStimuli.Add(Gravity);
//cStimulus_Physical WorldEdges = new cStimulus_Physical("World Edges");
//ListCellStimuli.Add(WorldEdges);
cStimulus_Physical BrownianMotion = new cStimulus_Physical("Brownian Motion");
ListCellStimuli.Add(BrownianMotion);
cStimulus_Chemical ToxicCompound1 = new cStimulus_Chemical("ToxicCompound1");
ListCellStimuli.Add(ToxicCompound1);
#endregion
#region build the cell agents
#endregion
cNewAgent BiologicalExperiment_DRC = new cNewAgent(new cPoint3D(0, 0, 0), new cPoint3D(5, 5, 5), "DRC");
double Concentration = 0.01;
for (int i = 0; i < 2; i++)
{
double WellSpacing = 1;
cNewAgent BiologicalExperiment_Well = new cNewAgent(new cPoint3D(WellSpacing, 0, 0), new cPoint3D(1, 1, 1), "Well " + i);
// add a new Property to the well
cInternalProperty Cpd1Concentration = new cInternalProperty();
Cpd1Concentration.Name = "Compound 1 Concentration";
BiologicalExperiment_Well.AddProperty(Cpd1Concentration);
// add the cellular agents in the well
int RegularCellsNumber = 20;
for (int CellIdx = 0; CellIdx < RegularCellsNumber; CellIdx++)
{
cAgent_Cell Agent_RegularCell = new cAgent_Cell(new cPoint3D(0.02 * CellIdx, 0.2, 0.0200 * i), new cPoint3D(0.0100, 0.0100, 0.0100), "Regular Cell " + CellIdx);
Agent_RegularCell.AssociatedStimuli = ListCellStimuli;
BiologicalExperiment_Well.AddNewAgent(Agent_RegularCell);
}
int CancerCellsNumber = 30;
for (int CellIdx = 0; CellIdx < CancerCellsNumber; CellIdx++)
{
cAgent_Cell Agent_CancerCell = new cAgent_Cell(new cPoint3D(0.0100 * i, 0.0100 * CellIdx, 0.1000), new cPoint3D(0.0200, 0.0200, 0.0200), "Cancer Cell " + CellIdx);
Agent_CancerCell.AssociatedStimuli = ListCellStimuli;
BiologicalExperiment_Well.AddNewAgent(Agent_CancerCell);
}
// add the well agent in the DRC
BiologicalExperiment_DRC.AddNewAgent(BiologicalExperiment_Well);
Concentration *= 2;
}
for (int Iteration = 0; Iteration < 1; Iteration++)
{
BiologicalExperiment_DRC.Run();
}
// display objects in 3D
cViewer3D V3D = new cViewer3D();
// c3DNewWorld MyWorld = new c3DNewWorld((cPoint3D)BiologicalExperiment_DRC.InternalProperties["Volume"], new cPoint3D(1, 1, 1));
c3DNewWorld MyWorld = new c3DNewWorld(new cPoint3D(1, 1, 1), new cPoint3D(1, 1, 1));
V3D.SetInputData(MyWorld);
V3D.Run();
cDesignerSinglePanel CD = new cDesignerSinglePanel();
CD.SetInputData(V3D.GetOutPut());
if (CD.Run().IsSucceed == false) return;
cListGeometric3DObject GlobalList = new cListGeometric3DObject("Global List");
cListGeometric3DObject CellsList = new cListGeometric3DObject("Cells");
cInternalProperty TmpProp;
foreach (cNewAgent TmpWell in BiologicalExperiment_DRC)
{
cPoint3D ObjectPos = TmpWell.GetAbsoluteGetPosition();
c3DCube SpaceCube = new c3DCube();
TmpProp = TmpWell.InternalProperties["Volume"];
cPoint3D VOlume = new cPoint3D(0, 0, 0);
SpaceCube.Create(ObjectPos, VOlume, Color.Blue);
SpaceCube.SetOpacity(0.2);
GlobalList.AddObject(SpaceCube);
foreach (cNewAgent TmpCell in TmpWell)
{
ObjectPos = TmpCell.GetAbsoluteGetPosition();
c3DSphere _3DSphere = new c3DSphere(ObjectPos, 0.05, Color.Red);
TmpProp = TmpCell.InternalProperties["Volume"];
VOlume = new cPoint3D(0, 0, 0);// (cPoint3D)TmpCell.InternalProperties["Volume"];
//_3DSphere.(ObjectPos, 0.5, Color.Red);
_3DSphere.SetName(TmpCell.GetName());
_3DSphere.SetOpacity(1);
CellsList.AddObject(_3DSphere);
}
}
GlobalList.AddRange(CellsList);
foreach (var item in GlobalList)
MyWorld.AddGeometric3DObject(item);
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(CD.GetOutPut());
CDW.Title = "3D world";
if (CDW.Run().IsSucceed == false) return;
CDW.Display();
return;
}
private void dDisplayToolStripMenuItem_Click(object sender, EventArgs e)
{
cViewer3D V3D = new cViewer3D();
c3DNewWorld MyWorld = new c3DNewWorld(new cPoint3D(1, 1, 1), new cPoint3D(1, 1, 1));
MyWorld.BackGroundColor = cGlobalInfo.OptionsWindow.FFAllOptions.panelFor3DBackColor.BackColor;
V3D.SetInputData(MyWorld);
V3D.Run();
cDesignerSinglePanel CD = new cDesignerSinglePanel();
CD.SetInputData(V3D.GetOutPut());
if (CD.Run().IsSucceed == false) return;
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(CD.GetOutPut());
CDW.Title = "3D world";
if (CDW.Run().IsSucceed == false) return;
CDW.Display();
}
private void dToolStripMenuItemScatterPlot3D_Click(object sender, EventArgs e)
{
int MaxNumberOfPts = (int)cGlobalInfo.OptionsWindow.FFAllOptions.numericUpDownMinNumPointForFastDisp.Value;
if (cGlobalInfo.CurrentScreening.ListPlatesActive.GetListActiveWells().Count > MaxNumberOfPts)
{
cExtendedTable ET = cGlobalInfo.CurrentScreening.ListPlatesActive.GetListActiveWells().GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptors(), false, false);
cNormalize N = new cNormalize();
N.SetInputData(ET);
N.NormalizationType = eNormalizationType.MIN_MAX;
N.Run();
cExtendedTable NormTable = N.GetOutPut();
cViewer3D V3D = new cViewer3D();
c3DPointCloud _3DPtCloud = new c3DPointCloud(NormTable);
_3DPtCloud.AutomatedPtColorMode = 1;
_3DPtCloud.Create(new cPoint3D(0, 0, 0));
_3DPtCloud.SetName("_3DPtCloud");
cListGeometric3DObject GlobalList = new cListGeometric3DObject("3D Point Cloud MetaObject");
GlobalList.Add(_3DPtCloud);
c3DObject_Axis Axis = new c3DObject_Axis();
cExtendedTable T = new cExtendedTable();
T.Add(new cExtendedList(ET[0].Name));
T[0].Tag = ET[0].Tag;
T[0].Add(0);
T[0].Add(1);
T.Add(new cExtendedList(ET[1].Name));
T[1].Tag = ET[1].Tag;
T[1].Add(0);
T[1].Add(1);
if (ET.Count > 2)
{
T.Add(new cExtendedList(ET[2].Name));
T[2].Tag = ET[2].Tag;
T[2].Add(0);
T[2].Add(1);
}
Axis.SetInputData(T);
c3DNewWorld MyWorld = new c3DNewWorld(new cPoint3D(1, 1, 1), new cPoint3D(1, 1, 1));
Axis.Run(MyWorld);
GlobalList.AddRange(Axis.GetOutPut());
// GlobalList.Add(Axis);
foreach (var item in GlobalList)
{
MyWorld.AddGeometric3DObject(item);
}
// MyWorld.BackGroundColor = cGlobalInfo.OptionsWindow.FFAllOptions.panelFor3DBackColor.BackColor;
V3D.SetInputData(MyWorld);
V3D.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(V3D.GetOutPut());
DTW.Title = "3D Cloud Point - " + ET[0].Count + " points";
DTW.Run();
DTW.Display();
}
else
{
cGlobalInfo.OptionsWindow.checkBoxConnectDRCPts.Checked = false;
FormFor3DDataDisplay FormToDisplayXYZ = new FormFor3DDataDisplay(ProcessModeEntireScreeningToolStripMenuItem.Checked, cGlobalInfo.CurrentScreening);
for (int i = 0; i < (int)cGlobalInfo.CurrentScreening.ListDescriptors.Count; i++)
{
FormToDisplayXYZ.comboBoxDescriptorX.Items.Add(cGlobalInfo.CurrentScreening.ListDescriptors[i].GetName());
FormToDisplayXYZ.comboBoxDescriptorY.Items.Add(cGlobalInfo.CurrentScreening.ListDescriptors[i].GetName());
FormToDisplayXYZ.comboBoxDescriptorZ.Items.Add(cGlobalInfo.CurrentScreening.ListDescriptors[i].GetName());
}
FormToDisplayXYZ.Show();
FormToDisplayXYZ.comboBoxDescriptorX.Text = cGlobalInfo.CurrentScreening.ListDescriptors[0].GetName() + " ";
FormToDisplayXYZ.comboBoxDescriptorY.Text = cGlobalInfo.CurrentScreening.ListDescriptors[0].GetName() + " ";
FormToDisplayXYZ.comboBoxDescriptorZ.Text = cGlobalInfo.CurrentScreening.ListDescriptors[0].GetName() + " ";
}
return;
}
private void dRC3DToolStripMenuItem_Click(object sender, EventArgs e)
{
if (cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptors().Count < 3)
{
MessageBox.Show("At least 3 descriptors are required for this operation !", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cListExtendedTable LET = new cListExtendedTable();
//List<cListWells> ListWells = new List<cListWells>();
//ListWells.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells);
// firstly, wells are grouped by class
//foreach (var item in cGlobalInfo.ListWellClasses)
//{
// List<cWellClassType> TypeForFilter = new List<cWellClassType>();
// TypeForFilter.Add(item);
// cListWells TmpListWells = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells.Filter(TypeForFilter);
// cGeneralDRC gDRC = new cGeneralDRC(TmpListWells);
// LET.Add(gDRC.ListAverageValues);
//}
for (int i = 0; i < 3; i++)
{
List<int> GroupForFilter = new List<int>();
GroupForFilter.Add(i);
cListWells TmpListWells = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells.FilterByGroup(GroupForFilter);
cGeneralDRC gDRC = new cGeneralDRC(TmpListWells);
LET.Add(gDRC.ListAverageValues);
}
cViewer3D V3D = new cViewer3D();
c3DNewWorld MyWorld = new c3DNewWorld(new cPoint3D(1, 1, 1), new cPoint3D(1, 1, 1));
c3DObjectScatterPoints _3DScatterPt = new c3DObjectScatterPoints();
//_3DScatterPt.SetInputData(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells.GetDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptors(), false));
// _3DScatterPt.GlobalInfo = this.GlobalInfo;
_3DScatterPt.SetInputData(LET);
// _3DScatterPt.IsLinked = true;
_3DScatterPt.Run(MyWorld);
cListGeometric3DObject GlobalList = _3DScatterPt.GetOutPut();
foreach (var item in GlobalList)
{
MyWorld.AddGeometric3DObject(item);
}
MyWorld.BackGroundColor = cGlobalInfo.OptionsWindow.FFAllOptions.panelFor3DBackColor.BackColor;
V3D.SetInputData(MyWorld);
V3D.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(V3D.GetOutPut());
DTW.Title = "3D Dose Response Visualization";
DTW.Run();
DTW.Display();
}
private void ToolStripMenuItem_Display3DTexture(object sender, EventArgs e)
{
cViewer3D V3D = new cViewer3D();
c3DNewWorld MyWorld = new c3DNewWorld(new cPoint3D(1, 1, 1), new cPoint3D(1, 1, 1));
cListGeometric3DObject GlobalList = new cListGeometric3DObject("2D Texture Metaobject");
c3DTexturedPlan _3DPlan = new c3DTexturedPlan(new cPoint3D(0, 0, 0), this.AssociatedImage);
// c3DElevationMap _3DMap = new c3DElevationMap(new cPoint3D(0, 0, 0), this.Input, this.LUT);
_3DPlan.SetName("2D Texture");
_3DPlan.Run();
GlobalList.Add(_3DPlan);
foreach (var item in GlobalList)
MyWorld.AddGeometric3DObject(item);
// MyWorld.AddLight(Color.White);
V3D.SetInputData(MyWorld);
V3D.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(V3D.GetOutPut());
DTW.Title = "2D texture (" + this.AssociatedImage.Name + ")";
DTW.Run();
DTW.Display();
}
private void ToolStripMenuItem_3DTest(object sender, EventArgs e)
{
Plugin3D NewPlug = new Plugin3D(this.AssociatedImage);
NewPlug.Show();
return;
c3DNewWorld MyWorld = new c3DNewWorld(new cPoint3D(this.AssociatedImage.Width, this.AssociatedImage.Height, this.AssociatedImage.Depth),
new cPoint3D(1, 1, 1));
cVolumeDetection Detection = new cVolumeDetection(this.AssociatedImage, 2, false);
Detection.SetShift(new cPoint3D(0, 0, 0));
Detection.SetContainers(null);
List<cInteractive3DObject> AssociatedBiologicalObjectList = Detection.IntensityThreshold(150f,
10,
float.MaxValue);
for (int i = 0; i < AssociatedBiologicalObjectList.Count; i++)
{
cBiological3DVolume TmpVol = (cBiological3DVolume)AssociatedBiologicalObjectList[i];
// MyWorld.AddGeometric3DObject(TmpVol.AttachText("Object " + i, 5, Color.White));
// //if (Obj.checkIsBoxPointingArrow.Checked)
cGeometric3DObject AssociatedArrow = TmpVol.AttachPointingArrow(5f, Color.Tomato);
MyWorld.AddGeometric3DObject(AssociatedArrow);
AssociatedBiologicalObjectList[i].SetOpacity(/*(double)Obj.ColorOpacity.numericUpDownValue.Value*/0.5);
AssociatedBiologicalObjectList[i].Colour = Color.Red;
MyWorld.AddBiological3DObject(AssociatedBiologicalObjectList[i]);
}
MyWorld.AddVolume3D(new cVolumeRendering3D(this.AssociatedImage.SingleChannelImage[0], new cPoint3D(0, 0, 0), null, MyWorld));
MyWorld.BackGroundColor = Color.LightGray;// GhostWhite;
cViewer3D V3D = new cViewer3D();
V3D.SetInputData(MyWorld);
V3D.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(V3D.GetOutPut());
DTW.Run();
DTW.Display();
}
public cFeedBackMessage Run()
{
if (base.Start() == false)
{
base.FeedBackMessage.IsSucceed = false;
return base.FeedBackMessage;
}
if ((this.Input == null)||(this.Input.Count==0))
{
FeedBackMessage.IsSucceed = false;
FeedBackMessage.Message = "No input data defined.";
return FeedBackMessage;
}
FeedBackMessage.IsSucceed = true;
#region Properties Management
object _firstValue = base.ListProperties.FindByName("Normalized ?");
bool IsNormalized = false;
if (_firstValue == null)
{
base.GenerateError("-Normalized ?- not found !");
return base.FeedBackMessage;
}
try
{
cProperty TmpProp = (cProperty)_firstValue;
IsNormalized = (bool)TmpProp.GetValue();
}
catch (Exception)
{
base.GenerateError("-Normalized ?- cast didn't work");
return base.FeedBackMessage;
}
_firstValue = base.ListProperties.FindByName("Draw Axis ?");
bool IsdrawAxis = true;
if (_firstValue == null)
{
base.GenerateError("-Draw Axis ?- not found !");
return base.FeedBackMessage;
}
try
{
cProperty TmpProp = (cProperty)_firstValue;
IsdrawAxis = (bool)TmpProp.GetValue();
}
catch (Exception)
{
base.GenerateError("-Draw Axis ?- cast didn't work");
return base.FeedBackMessage;
}
_firstValue = base.ListProperties.FindByName("Link Points ?");
bool IsLinked = false;
if (_firstValue == null)
{
base.GenerateError("-Link Points ?- not found !");
return base.FeedBackMessage;
}
try
{
cProperty TmpProp = (cProperty)_firstValue;
IsLinked = (bool)TmpProp.GetValue();
}
catch (Exception)
{
base.GenerateError("-Link Points ?- cast didn't work");
return base.FeedBackMessage;
}
_firstValue = base.ListProperties.FindByName("Desc. 1");
string Desc1;
if (_firstValue == null)
{
base.GenerateError("-Desc. 1- not found !");
return base.FeedBackMessage;
}
try
{
cProperty TmpProp = (cProperty)_firstValue;
Desc1 = (string)TmpProp.GetValue();
}
catch (Exception)
{
base.GenerateError("-Desc. 1- cast didn't work");
return base.FeedBackMessage;
}
cDescriptorType DescX = cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorByName(Desc1);
if (DescX == null)
{
base.GenerateError(Desc1 + " is not a descriptor !");
return base.FeedBackMessage;
}
_firstValue = base.ListProperties.FindByName("Desc. 2");
if (_firstValue == null)
{
base.GenerateError("-Desc. 2- not found !");
return base.FeedBackMessage;
}
try
{
cProperty TmpProp = (cProperty)_firstValue;
Desc1 = (string)TmpProp.GetValue();
}
catch (Exception)
{
base.GenerateError("-Desc. 2- cast didn't work");
return base.FeedBackMessage;
}
cDescriptorType DescY = cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorByName(Desc1);
if (DescY == null)
{
base.GenerateError(Desc1 + " is not a descriptor !");
return base.FeedBackMessage;
}
_firstValue = base.ListProperties.FindByName("Desc. 3");
if (_firstValue == null)
{
base.GenerateError("-Desc. 3- not found !");
return base.FeedBackMessage;
}
try
{
cProperty TmpProp = (cProperty)_firstValue;
Desc1 = (string)TmpProp.GetValue();
}
catch (Exception)
{
base.GenerateError("-Desc. 2- cast didn't work");
return base.FeedBackMessage;
}
cDescriptorType DescZ = cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorByName(Desc1);
if (DescZ == null)
{
base.GenerateError(Desc1 + " is not a descriptor !");
return base.FeedBackMessage;
}
#endregion
List<cDescriptorType> ListDesc = new List<cDescriptorType>();
ListDesc.Add(DescX);
ListDesc.Add(DescY);
ListDesc.Add(DescZ);
cListExtendedTable LET = new cListExtendedTable();
foreach (var item in cGlobalInfo.ListWellClasses)
{
List<cWellClassType> TypeForFilter = new List<cWellClassType>();
TypeForFilter.Add(item);
cExtendedTable TmpTable = ((cListWells)this.Input.Filter(TypeForFilter)).GetAverageDescriptorValues(ListDesc,false, false);
if (TmpTable != null)
LET.Add(TmpTable);
}
cViewer3D V3D = new cViewer3D();
c3DNewWorld MyWorld = new c3DNewWorld(new cPoint3D(1, 1, 1), new cPoint3D(1, 1, 1));
c3DObjectScatterPoints _3DScatterPt = new c3DObjectScatterPoints();
_3DScatterPt.ListProperties.FindByName("Draw Axis ?").SetNewValue(IsdrawAxis);
_3DScatterPt.ListProperties.FindByName("Normalized ?").SetNewValue(IsNormalized);
_3DScatterPt.ListProperties.FindByName("Link Points ?").SetNewValue(IsLinked);
_3DScatterPt.SetInputData(LET);
if (_3DScatterPt.Run(MyWorld).IsSucceed == false) return base.FeedBackMessage;
cListGeometric3DObject GlobalList = _3DScatterPt.GetOutPut();
foreach (var item in GlobalList)
{
MyWorld.AddGeometric3DObject(item);
}
MyWorld.BackGroundColor = cGlobalInfo.OptionsWindow.FFAllOptions.panelFor3DBackColor.BackColor;
V3D.SetInputData(MyWorld);
V3D.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(V3D.GetOutPut());
DTW.Title = "3D Scatter Plot(List "+this.Input.Count +" Wells)";
DTW.Run();
DTW.Display();
return base.FeedBackMessage;
}
private void ToolStripMenuItem_Display3DScatterGraph(object sender, EventArgs e)
{
cExtendedTable CET = new cExtendedTable();
foreach (DataGridViewColumn item in GridView.SelectedColumns)
{
CET.Add(Input[item.Index]);
}
if (this.Input.ListTags != null)
{
CET.ListTags = new List<object>();
foreach (var item in this.Input.ListTags)
{
CET.ListTags.Add(item);
}
}
cListExtendedTable LET = new cListExtendedTable();
LET.Add(CET);
//List<cListWells> ListWells = new List<cListWells>();
//ListWells.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells);
cViewer3D V3D = new cViewer3D();
c3DNewWorld MyWorld = new c3DNewWorld(new cPoint3D(1, 1, 1), new cPoint3D(1, 1, 1));
c3DObjectScatterPoints _3DScatterPt = new c3DObjectScatterPoints();
_3DScatterPt.ListProperties.FindByName("Draw Axis ?").SetNewValue((bool)true);
_3DScatterPt.ListProperties.FindByName("Draw Axis ?").IsGUIforValue = true;
_3DScatterPt.ListProperties.FindByName("Normalized ?").SetNewValue((bool)true);
_3DScatterPt.ListProperties.FindByName("Normalized ?").IsGUIforValue = true;
_3DScatterPt.ListProperties.FindByName("Link Points ?").SetNewValue((bool)false);
_3DScatterPt.ListProperties.FindByName("Link Points ?").IsGUIforValue = true;
//_3DScatterPt.GlobalInfo = cGlobalInfo;
_3DScatterPt.SetInputData(LET);
if (_3DScatterPt.Run(MyWorld).IsSucceed == false) return;
cListGeometric3DObject GlobalList = _3DScatterPt.GetOutPut();
foreach (var item in GlobalList)
{
MyWorld.AddGeometric3DObject(item);
}
V3D.SetInputData(MyWorld);
V3D.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(V3D.GetOutPut());
DTW.Title = "3D Scatter Graph ("+ this.Input.Name +")";
DTW.Run();
DTW.Display();
}
public void Refresh3DScreenView()
{
cViewer3D V3D = new cViewer3D();
c3DNewWorld MyWorld = new c3DNewWorld(new cPoint3D(1, 1, 1), new cPoint3D(1, 1, 1));
V3D.SetInputData(MyWorld);
c3DObject_Screening2D Screening2D = new c3DObject_Screening2D();
Screening2D.SetInputData(cGlobalInfo.CurrentScreening);
Screening2D.Run(MyWorld);
MyWorld.AddGeometric3DObjects(Screening2D.GetOutPut());
// c3DObject_Plate2D Plate2D = new c3DObject_Plate2D();
// Plate2D.SetInputData(this);
// Plate2D.Run(MyWorld);
// MyWorld.AddGeometric3DObjects(Plate2D.GetOutPut());
// MyWorld.BackGroundColor = Color.White;
V3D.Run();
cExtendedControl EXT = V3D.GetOutPut();
cGlobalInfo.WindowHCSAnalyzer.tabPage3DPlatesView.Controls.Clear();
EXT.Width = cGlobalInfo.WindowHCSAnalyzer.tabPage3DPlatesView.Width;
EXT.Height = cGlobalInfo.WindowHCSAnalyzer.tabPage3DPlatesView.Height;
// EXT.Controls[0].Width = cGlobalInfo.WindowHCSAnalyzer.tabPage3DPlatesView.Width;
// EXT.Controls[0].Height = cGlobalInfo.WindowHCSAnalyzer.tabPage3DPlatesView.Height;
cGlobalInfo.WindowHCSAnalyzer.tabPage3DPlatesView.Controls.Add(EXT);
//cDesignerSinglePanel CD = new cDesignerSinglePanel();
//CD.SetInputData(V3D.GetOutPut());
//if (CD.Run().IsSucceed == false) return;
//cDisplayToWindow CDW = new cDisplayToWindow();
//CDW.SetInputData(CD.GetOutPut());
//CDW.Title = "3D world";
//if (CDW.Run().IsSucceed == false) return;
//CDW.Display();
}
private void GenerateGraph()
{
V3D = new cViewer3D();
MyWorld = new c3DNewWorld(new cPoint3D(1, 1, 1), new cPoint3D(1, 1, 1));
cListGeometric3DObject GlobalList = new cListGeometric3DObject("Elevation Map MetaObject");
if(this.Input!=null)
foreach (var item in this.Input)
{
c3DElevationMap _3DMap = new c3DElevationMap(new cPoint3D(-this.Input[0].Count / 2, -this.Input[0][0].Count / 2, 0), item, this.LUT);
_3DMap.SetName("Elevation Map [" + item.Name +"]");
GlobalList.Add(_3DMap);
}
if (this.InputImage != null)
{
for (int i = 0; i < this.InputImage.GetNumChannels(); i++)
{
c3DElevationMap _3DMapFromImage = new c3DElevationMap(new cPoint3D(0, 0, 0), this.InputImage, i, 0);
if(this.InputImage.AssociatedImagePanel!=null)
_3DMapFromImage.SetOpacity(this.InputImage.AssociatedImagePanel.LUTManager.GetImageDisplayProperties().ListOpacity[i]/100.0);
_3DMapFromImage.SetName("Elevation Map [" + this.InputImage.SingleChannelImage[i].Name+"]");
GlobalList.Add(_3DMapFromImage);
}
}
foreach (var item in GlobalList)
{
MyWorld.AddGeometric3DObject(item);
}
MyWorld.BackGroundColor = cGlobalInfo.OptionsWindow.FFAllOptions.panelFor3DBackColor.BackColor;
V3D.SetInputData(MyWorld);
V3D.Run();
#region obsolete
//// get a reference to the renderwindow of our renderWindowControl1
//vtkRenderWindow RenderWindow = renderWindowControl1.RenderWindow;
//// get a reference to the renderer
//vtkRenderer Renderer = RenderWindow.GetRenderers().GetFirstRenderer();
//vtkPoints points = vtkPoints.New();
//double MaxZ = this.Input.Max();
//double MinZ = this.Input.Min();
//for (int IdxX = 0; IdxX < this.Input.Count; IdxX++)
// for (int IdxY = 0; IdxY < this.Input[IdxX].Count; IdxY++)
// {
// double Value = ((this.Input[IdxX][this.Input[IdxX].Count- IdxY-1] - MinZ) / (MaxZ - MinZ) * this.Input.Count) / 5;
// points.InsertNextPoint(IdxX, IdxY, Value);
// }
//double[] bounds = points.GetBounds();
//// Add the grid points to a polydata object
//vtkPolyData inputPolyData = vtkPolyData.New();
//inputPolyData.SetPoints(points);
//// Triangulate the grid points
//vtkDelaunay2D delaunay = vtkDelaunay2D.New();
//delaunay.SetInput(inputPolyData);
//delaunay.Update();
//vtkElevationFilter elevationFilter = vtkElevationFilter.New();
//elevationFilter.SetInputConnection(delaunay.GetOutputPort());
//elevationFilter.SetLowPoint(0.0, 0.0, bounds[5]);
//elevationFilter.SetHighPoint(0.0, 0.0, bounds[4]);
//elevationFilter.Update();
//vtkPolyData output = vtkPolyData.New();
//output.ShallowCopy(vtkPolyData.SafeDownCast(elevationFilter.GetOutput()));
//// Generate the colors for each point based on the color map
//vtkUnsignedCharArray colors = vtkUnsignedCharArray.New();
//colors.SetNumberOfComponents(3);
//colors.SetName("Colors");
//output.GetPointData().AddArray(colors);
//// Visualize
//vtkPolyDataMapper mapper = vtkPolyDataMapper.New();
//mapper.SetInput(output);
//// Create the color map
//vtkLookupTable colorLookupTable = vtkLookupTable.New();
//colorLookupTable.Build();
//if (LUT == null)
//{
// cLUT MyLut = new cLUT();
// LUT = MyLut.LUT_JET;
//}
////colorLookupTable.SetValueRange(1,0);//bounds[0], bounds[1]);
//double LUTSize = LUT[0].Length;
//colorLookupTable.SetNumberOfTableValues((int)LUTSize - 1);
//for (int i = 0; i < (int)LUTSize - 1; i++)
//{
// colorLookupTable.SetTableValue((int)LUTSize - 1 - i-1, this.LUT[0][i] / LUTSize, this.LUT[1][i] / LUTSize, this.LUT[2][i] / LUTSize, 1);
//}
////colorLookupTable.SetSaturationRange(0, 0);
////colorLookupTable.SetTableRange(bounds[4], bounds[5]);
////table.SetRange(range[0], range[1]); //shoul here not be the minimum/maximum possible of "data"?
//// colorLookupTable.SetRampToLinear();
//colorLookupTable.Build();
//mapper.SetLookupTable(colorLookupTable);
//vtkActor NewActor = vtkActor.New();
//NewActor.SetMapper(mapper);
//Renderer.AddActor(NewActor);
//// set background color
//Renderer.SetBackground(BackGroundColor.R / 255.0, BackGroundColor.G / 255.0, BackGroundColor.B / 255.0);
//// ensure all actors are visible (in this example not necessarely needed,
//// but in case more than one actor needs to be shown it might be a good idea)
//Renderer.ResetCamera();
#endregion
}
