static void Test2RI()
{
int repeats = 10;
UserConfigSetup.SetGet();
Directory.EnumerateFiles(UserConfig.workingDirectory, "*.idx2R").ToList().ForEach(x => File.Delete(x));
Herald.Initialize(Herald.Destination.Both, UserConfig.logFile);
Orchestrator orchestrator = new Orchestrator();
orchestrator.CommandParse("setdp 4 8");
Console.Clear();
int bin = 0;
Console.WriteLine("Enter bin size :");
int.TryParse(Console.ReadLine(), out bin);
var timer = new Stopwatch();
timer.Start();
orchestrator.Index2ndResolution(new string[] { "2RI", "uq", bin.ToString() });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "2riTimeToCreateTest.txt", true))
{
writter.WriteLine(bin.ToString() + "\t" + timer.Elapsed.TotalSeconds.ToString());
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "1", "2", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t1\t2\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "5", "10", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t5\t10\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "10", "20", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t10\t20\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "50", "60", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t50\t60\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "80", "90", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t80\t90\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "100", "200", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t100\t200\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "200", "220", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t200\t220\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "300", "320", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t300\t320\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "400", "500", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t400\t500\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "550", "1000", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t550\t1000\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "1", "1", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t1\t1\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "10", "10", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t10\t10\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "25", "25", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t25\t25\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "50", "50", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t50\t50\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "60", "60", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t60\t60\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "80", "80", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t80\t80\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "100", "100", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t100\t100\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "150", "150", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t150\t150\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "200", "200", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t200\t200\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
for (int r = 0; r < repeats; r++)
{
timer.Restart();
orchestrator.Cover(new string[] { "cover", "covres.bed", "*", "500", "500", "count" });
timer.Stop();
using (var writter = new StreamWriter(UserConfig.workingDirectory + "CoverResult.txt", true))
{
writter.WriteLine(bin.ToString() + "\t500\t500\t" + timer.Elapsed.TotalSeconds.ToString());
}
}
Herald.Dispose();
}
static void Main(string[] args)
{
/*Test2RI();
* Console.WriteLine("");
* Console.WriteLine("Done ... press any key to exit.");
* Console.ReadKey();
* return;*/
Console.Title = "Di4B: 1D intervals incremental inverted index for Bio-informatics";
Console.Clear();
Console.WriteLine("Following are the environment and initialization parameters ...");
try
{
if (!UserConfigSetup.SetGet())
{
return; // Exit application.
}
}
catch (Exception)
{
Console.WriteLine("");
Console.WriteLine("Error !! Invalid URI.");
return;
}
Console.Write("Initializing ...");
Herald.Initialize(Herald.Destination.Both, UserConfig.logFile);
Orchestrator orchestrator = new Orchestrator();
Console.Write(" Done!");
Console.WriteLine("");
Console.Write("Press any key to continue ...");
Console.ReadKey(true);
Console.Clear();
Console.WriteLine("");
Console.WriteLine(".::. Hi, I'm Di4, ready and at your service.");
Console.WriteLine("");
Console.WriteLine(".::. Working Directory : {0}", UserConfig.workingDirectory);
try
{
do
{
Herald.Announce(Herald.MessageType.None, "");
Console.Write("> ");
}while (!orchestrator.CommandParse(Console.ReadLine()));
}
catch (Exception e)
{
if (e.InnerException == null)
{
Herald.Announce(Herald.MessageType.Error,
"My apologies for inconvenience, this was not supposed to happen!" +
" Please restart Di4 and if you experience the issue again, please contact the support.");
}
else
{
Herald.Announce(Herald.MessageType.Error, e.InnerException.Message);
Herald.Announce(Herald.MessageType.None, "Please restart the application having resolved the error(s).");
}
}
Herald.Dispose();
}