private void SelectProtocol()
{
if (listView_Protocols.SelectedItems.Count > 0)
{
// match selected protocol to text from listview item
for (int i = 0; i < filterList.Count; i++)
{
if (listView_Protocols.SelectedItems[0].Text == filterList[i].Protocol_Name)
{
SelectedProtocol = filterList[i];
}
}
// do something with it!!!!!
//
//
//
}
}
public static RoboSep_Protocol generateProtocolFromFile(FileInfo Pfile)
{
// temp variables
RoboSep_Protocol tempProtocol;
string filePath = Pfile.FullName;
string FileName = Pfile.Name;
string Name = string.Empty;
string Species = string.Empty;
string Selection = string.Empty;
string SpeciesSelection = string.Empty;
string Class = string.Empty;
bool Hum = false;
bool Mou = false;
bool Pos = false;
bool Neg = false;
bool WBl = false;
List <RoboSep_Protocol_VialBarcodes> vialBarcodes = null;
int Q = -1;
RoboSepProtocol ProtocolInfo = new RoboSepProtocol();
if (File.Exists(Pfile.FullName))
{
// serializer
XmlSerializer myXmlSerializer = new XmlSerializer(typeof(RoboSepProtocol));
// Initialise a file stream for reading
FileStream fs = new FileStream(Pfile.FullName, FileMode.Open);
try
{
// Deserialize a RoboSepProtocol XML description into a RoboSepProtocol
// object that matches the contents of the specified protocol file.
// Oct 1, 2013 Sunny commented out
// These codes are obsolete
/*
* XmlReader reader = new XmlTextReader(fs);
*
* // Create a validating reader to process the file. Report any errors to the
* // validation page.
* XmlValidatingReader validatingReader = new XmlValidatingReader(reader);
* validatingReader.ValidationType = ValidationType.Schema;
*
* // Get the RoboSep protocol schema and add it to the collection for the
* // validator
* XmlSchemaCollection xsc = new XmlSchemaCollection();
* xsc.Add("STI", GetProtocolXSD());
* validatingReader.Schemas.Add(xsc);
*
* // 'Rehydrate' the object (that is, deserialise data into the object)
* ProtocolInfo = (RoboSepProtocol)myXmlSerializer.Deserialize(validatingReader);
*
* //myCurrentActionContext = "User1.udb";
*/
XmlReaderSettings settings = new XmlReaderSettings();
//settings.ValidationType = ValidationType.Schema;
settings.ValidationType = ValidationType.None;
settings.Schemas.Add("STI", GetProtocolXSD());
XmlReader reader = XmlReader.Create(fs, settings);
ProtocolInfo = (RoboSepProtocol)myXmlSerializer.Deserialize(reader);
}
catch (Exception ex)
{
string sMsg = String.Format("Robosep Protocol File '{0}' is invalid. Exception={1}", Pfile.FullName, ex.Message);
System.Diagnostics.Debug.Write("!!!RoboSep_Protocols : Read Robosep Protocol failed.");
MessageBox.Show(sMsg);
//myCurrentActionContext = "User1.udb";
}
finally
{
// Close the file stream
fs.Close();
}
}
// get number of quadrants
Q = Convert.ToInt32(ProtocolInfo.constraints.quadrants.number);
// get protocol type to set bools
string pType = ProtocolInfo.type.ToString();
switch (pType)
{
case "HumanNegative":
Hum = true;
Mou = false;
Pos = false;
Neg = true;
Class = "HN";
break;
case "HumanPositive":
Hum = true;
Mou = false;
Pos = true;
Neg = false;
Class = "HP";
break;
case "Positive":
Hum = false;
Mou = false;
Pos = true;
Neg = false;
Class = "Pos";
break;
case "Negative":
Hum = false;
Mou = false;
Pos = false;
Neg = true;
Class = "Neg";
break;
case "WholeBloodPositive":
Hum = true;
Mou = false;
Pos = true;
Neg = false;
WBl = true;
Class = "HP WB";
break;
case "WholeBloodNegative":
Hum = true;
Mou = false;
Pos = false;
Neg = true;
WBl = true;
Class = "HN WB";
break;
case "MouseNegative":
Hum = false;
Mou = true;
Pos = false;
Neg = true;
Class = "MN";
break;
case "MousePositive":
Hum = false;
Mou = true;
Pos = true;
Neg = false;
Class = "MP";
break;
}
if (ProtocolInfo.vialBarcodes != null)
{
for (int i = 0; i < ProtocolInfo.vialBarcodes.Length; i++)
{
if (ProtocolInfo.vialBarcodes[i].quadrant.Trim() != String.Empty)
{
RoboSep_Protocol_VialBarcodes barcodeData = new RoboSep_Protocol_VialBarcodes(Convert.ToUInt32(ProtocolInfo.vialBarcodes[i].quadrant), ProtocolInfo.vialBarcodes[i].squareVialBarcode,
ProtocolInfo.vialBarcodes[i].circleVialBarcode, ProtocolInfo.vialBarcodes[i].triangleVialBarcode);
if (vialBarcodes == null)
{
vialBarcodes = new List <RoboSep_Protocol_VialBarcodes>();
}
vialBarcodes.Add(barcodeData);
}
}
}
#region setStrings
// get protocol name (label)
Name = ProtocolInfo.header.label.Trim();
// set species string
if (Hum || Mou)
{
// get rid of first 6 chars (Human or Mouse)
Species = removeTextFromString("Human ", Name);
Species = removeTextFromString("Mouse ", Species);
}
else
{
Species = Name;
}
// set selection string
string pselect = "Positive Selection ";
string nselect = "Negative Selection ";
Selection = removeTextFromString(pselect, Name);
Selection = removeTextFromString(nselect, Selection);
if (Hum || Mou)
{
// get rid of first 6 chars (Human or Mouse)
SpeciesSelection = removeTextFromString("Human ", Selection);
SpeciesSelection = removeTextFromString("Mouse ", SpeciesSelection);
}
else
{
SpeciesSelection = Selection;
}
#endregion
tempProtocol = new RoboSep_Protocol(filePath, FileName, Name, Species, Selection, SpeciesSelection, Class, Q, Hum, Mou, Pos, Neg, WBl, vialBarcodes);
return(tempProtocol);
}
