static void Main(string[] args)
{
// Read the csv file for inputs
using (StreamWriter outputFile = File.CreateText("testcaseResults.csv"))
using (StreamReader reader = new StreamReader("testcases.csv"))
using (CsvReader csv = new CsvReader(reader, CultureInfo.InvariantCulture))
{
Testcase.WriteHeaders(outputFile);
csv.Configuration.BadDataFound = null;
csv.Configuration.HasHeaderRecord = false; // Can't use headers since CsvHelper fails on headers with spaces and/or slash (e.g. "Scr 1 mg/dl")
csv.Configuration.RegisterClassMap <TestcaseMap>();
csv.Read();
while (csv.Read()) // Foreach row
{
string value;
List <string> values = new List <string>();
for (int i = 0; csv.TryGetField <string>(i, out value); i++)
{
values.Add(value);
}
//Testcase testcase = csv.GetRecord<Testcase>();
Testcase testcase = new Testcase(values);
// Run Hypokalemia Module
// Add Treatments, Actions and Reasons to the testcase
RunTestcase(testcase);
// Write testcase to a new csv file.
testcase.WriteHypokalemiaV2(outputFile);
}
}
}
public Testcase(Testcase other)
{
PatientID = other.PatientID;
Gender = other.Gender;
DOB = other.DOB;
Ethnicity = other.Ethnicity;
Creatinine1 = other.Creatinine1;
SCr1date = other.SCr1date;
Creatinine2 = other.Creatinine2;
SCr2date = other.SCr2date;
CCR = other.CCR;
CCRdate = other.CCRdate;
Dialysis = other.Dialysis;
UrineProduction = other.UrineProduction;
UrineDate = other.UrineDate;
Weight = other.Weight;
WtDate = other.WtDate;
Potassium = other.Potassium;
KDate = other.KDate;
Phosphorus = other.Phosphorus;
PhosDate = other.PhosDate;
Calcium = other.Calcium;
CaDate = other.CaDate;
CaType = other.CaType;
Magnesium = other.Magnesium;
MgDate = other.MgDate;
Diarrhea = other.Diarrhea;
Albumin = other.Albumin;
AlbDate = other.AlbDate;
Supplement24hrs = other.Supplement24hrs;
Supplement48hrs = other.Supplement48hrs;
Supplements = other.Supplements;
}
public Testcase(Testcase other)
{
admissionID = other.admissionID;
newPotassiumValue = other.newPotassiumValue;
PatientID = other.PatientID;
Gender = other.Gender;
DOB = other.DOB;
Ethnicity = other.Ethnicity;
Creatinine1 = other.Creatinine1;
SCr1date = other.SCr1date;
Creatinine2 = other.Creatinine2;
SCr2date = other.SCr2date;
Creatinine3 = other.Creatinine3;
SCr3date = other.SCr3date;
CCR1 = other.CCR1;
CCR1date = other.CCR1date;
CCR2 = other.CCR2;
CCR2date = other.CCR2date;
CCR3 = other.CCR3;
CCR3date = other.CCR3date;
Dialysis = other.Dialysis;
UrineProduction3hours = other.UrineProduction3hours;
UrineProduction6hours = other.UrineProduction6hours;
UrineProduction24hours = other.UrineProduction24hours;
Weight = other.Weight;
WtDate = other.WtDate;
LoopDiureticsDsc = other.LoopDiureticsDsc;
Potassium1 = other.Potassium1;
K1Date = other.K1Date;
Potassium2 = other.Potassium2;
K2Date = other.K2Date;
Potassium3 = other.Potassium3;
K3Date = other.K3Date;
Phosphorus = other.Phosphorus;
PhosDate = other.PhosDate;
Calcium = other.Calcium;
CaDate = other.CaDate;
CaType = other.CaType;
Magnesium = other.Magnesium;
MgDate = other.MgDate;
Diarrhea = other.Diarrhea;
Albumin = other.Albumin;
AlbDate = other.AlbDate;
Supplement24hrs = other.Supplement24hrs;
Supplement48hrs = other.Supplement48hrs;
Supplements = other.Supplements;
}
private static void RunTestcase(Testcase testcase)
{
ValueTable testData = new ValueTable(testcase.K1Date);
ValueTable treatmentData = new ValueTable(testcase.K1Date);
double temp;
double temp2;
//(data-value(name dialysis) (patient 123456) (value NO))
if (testcase.Dialysis.ToLower().StartsWith("y"))
{
testData.SetValue("dialysis", "YES", "", testcase.K1Date);
}
else
{
testData.SetValue("dialysis", "NO", "", testcase.K1Date);
}
//(data-value(name GFR) (patient 123456) (value 45))
if (testcase.Creatinine1 != "")
{
double GFR = GetGFR(testcase.Creatinine1, testcase.DOB, testcase.K1Date, testcase.Gender, testcase.Ethnicity);
if (GFR >= 0)
{
testData.SetValue("GFR", GFR, "ml/min", testcase.SCr1date);
}
}
//GFR-trend is calculated in the module. (data-value(name GFR-trend) (patient 123456) (value Stable))
if (testcase.Creatinine2 != "")
{
double GFR = GetGFR(testcase.Creatinine2, testcase.DOB, testcase.K1Date, testcase.Gender, testcase.Ethnicity);
if (GFR >= 0)
{
testData.SetValue("GFR", GFR, "ml/min", testcase.SCr2date);
}
}
if (testcase.Creatinine3 != "")
{
double GFR = GetGFR(testcase.Creatinine3, testcase.DOB, testcase.K1Date, testcase.Gender, testcase.Ethnicity);
if (GFR >= 0)
{
testData.SetValue("GFR", GFR, "ml/min", testcase.SCr3date);
}
}
if (double.TryParse(testcase.UrineProduction3hours, out temp))
{
testData.SetValue("urine production", temp, "ml/kg/hr", testcase.K1Date);
}
if (double.TryParse(testcase.Potassium1, out temp))
{
testData.SetValue("potassium", temp, "mEq/l", testcase.K1Date);
}
if (double.TryParse(testcase.Potassium2, out temp))
{
testData.SetValue("potassium", temp, "mEq/l", testcase.K2Date);
}
if (double.TryParse(testcase.Potassium3, out temp))
{
testData.SetValue("potassium", temp, "mEq/l", testcase.K3Date);
}
if (double.TryParse(testcase.Magnesium, out temp))
{
testData.SetValue("magnesium", temp, "mg/dl", testcase.MgDate);
}
if (double.TryParse(testcase.Phosphorus, out temp))
{
testData.SetValue("phosphorus", temp, "mg/dl", testcase.PhosDate);
}
if (testcase.CaType == "ionized" && double.TryParse(testcase.Calcium, out temp))
{
testData.SetValue("calcium, ionized", temp, "mg/dl", testcase.CaDate);
}
if (testcase.CaType == "total" && double.TryParse(testcase.Calcium, out temp) && double.TryParse(testcase.Albumin, out temp2))
{
if (temp2 < 4.0)
{
temp += 0.8 * (4.0 - temp2);
}
testData.SetValue("calcium, ionized", temp, "mg/dl", testcase.CaDate);
}
testData.SetValue("past-loop-diuretic", testcase.LoopDiureticsDsc.ToLower().StartsWith("y") ? "Yes" : "No", "", testcase.K1Date);
testData.SetValue("past-diarrhea", testcase.Diarrhea.ToLower().StartsWith("y") ? "Yes" : "No", "", testcase.K1Date);
if (double.TryParse(testcase.Supplement24hrs, out temp))
{
treatmentData.SetValue("supplement24hrs", temp, "mEq", testcase.K1Date);
}
Intervention hypokalemia = new Module(testcase.PatientID, testData, treatmentData);
DecisionResult results = hypokalemia.IdentifyTreatment();
//testcase.Treatments = results.treatments.OrderBy(t => t.index)
// .Select(t => t.index + ": " + t.type + ": " + t.med
// + " " + t.quantity + " " + t.units + " " + t.route).ToList();
if (results.treatments.Count == 1 && results.treatments[0].type.Contains("KCl")) // KCl only
{
testcase.Treatments = results.treatments.Select(t => t.type.Trim('"') + (t.route == "nil" ? "" : " " + t.route)).ToList();
}
else // Kphos and KCl, ignore routes
{
testcase.Treatments = results.treatments.Select(t => t.type.Trim('"')).ToList();
}
testcase.Actions = results.actions.Select(a => a.text.Trim('"')).ToList();
testcase.Reasons = results.reasons.Select(r => r.text.Trim('"')).ToList();
}
private static void RunTestcase(Testcase testcase)
{
ValueTable testData = new ValueTable(testcase.KDate);
ValueTable treatmentData = new ValueTable(testcase.KDate);
double temp;
double temp2;
if (testcase.Dialysis.ToLower().StartsWith("y"))
{
testData.SetValue("GFR", -1, "", testcase.KDate);
}
else
{
if (testcase.Creatinine1 != "")
{
double GFR1 = GetGFR(testcase.Creatinine1, testcase.DOB, testcase.KDate, testcase.Gender, testcase.Ethnicity);
if (GFR1 >= 0)
{
testData.SetValue("gfr", GFR1, "ml/min", testcase.SCr1date);
}
}
if (testcase.Creatinine2 != "")
{
double GFR2 = GetGFR(testcase.Creatinine2, testcase.DOB, testcase.KDate, testcase.Gender, testcase.Ethnicity);
if (GFR2 >= 0)
{
testData.SetValue("gfr", GFR2, "ml/min", testcase.SCr2date);
}
}
}
if (double.TryParse(testcase.UrineProduction, out temp))
{
testData.SetValue("urine production", temp, "ml/kg/hr", testcase.UrineDate);
}
if (double.TryParse(testcase.Potassium, out temp))
{
testData.SetValue("potassium", temp, "mEq/l", testcase.KDate);
}
if (double.TryParse(testcase.Magnesium, out temp))
{
testData.SetValue("magnesium", temp, "mg/dl", testcase.MgDate);
}
if (double.TryParse(testcase.Phosphorus, out temp))
{
testData.SetValue("phosphorus", temp, "mg/dl", testcase.PhosDate);
}
if (testcase.CaType == "ionized" && double.TryParse(testcase.Calcium, out temp))
{
testData.SetValue("calcium, ionized", temp, "mg/dl", testcase.CaDate);
}
if (testcase.CaType == "total" && double.TryParse(testcase.Calcium, out temp) && double.TryParse(testcase.Albumin, out temp2))
{
if (temp2 < 4.0)
{
temp += 0.8 * (4.0 - temp2);
}
testData.SetValue("calcium, ionized", temp, "mg/dl", testcase.CaDate);
}
testData.SetValue("diarrhea", testcase.Diarrhea.ToLower().StartsWith("y") ? "Yes" : "No", "", testcase.KDate);
testData.SetValue("EnteralRoute", true, "", testcase.KDate);
testData.SetValue("CentralRoute", true, "", testcase.KDate);
testData.SetValue("PeripheralRoute", true, "", testcase.KDate);
if (double.TryParse(testcase.Supplement48hrs, out temp))
{
treatmentData.SetValue("kcl", temp, "mEq", testcase.KDate.AddDays(-1));
}
Intervention hypokalemia = new Module(testcase.PatientID, testData, treatmentData);
DecisionResult results = hypokalemia.IdentifyTreatment();
testcase.Treatments = results.treatments.OrderBy(t => t.index)
.Select(t => t.index + ": " + t.type + ": " + t.med
+ " " + t.quantity + " " + t.units + " " + t.route).ToList();
testcase.Actions = results.actions.Select(a => a.text.Trim('"')).ToList();;
testcase.Reasons = results.reasons.Select(r => r.level + ": " + r.text.Trim('"')).ToList();
}
