/// <summary>
/// Create bar graph showing peak areas.
/// </summary>
private void CreateGraph()
{
if (_toolClient == null)
{
return;
}
// Retrieve the current report.
IReport report = _toolClient.GetReport("Peak Area"); // Not L10N
// Get the same report, more dynamically.
var reportStream = typeof(MainForm).Assembly.GetManifestResourceStream("ExampleInteractiveTool.tool_inf.ExampleTool_report.skyr"); // Not L10N
if (reportStream == null)
{
return;
}
var reader = new StreamReader(reportStream);
IReport report2 = _toolClient.GetReportFromDefinition(reader.ReadToEnd());
AssertReportsEquals(report, report2);
_peptides = new List <string>();
_peptideLinks = new List <string>();
_replicateLinks = new List <string>();
var replicates = new List <string>();
var peptideAreas = new Dictionary <string, double>();
foreach (var row in report.Cells)
{
// Get report fields.
var peptideName = row[0];
var peakArea = row[1];
var peptideLocation = row[2];
var replicateName = row[3];
var replicateLocation = row[4];
// Get the name of this peptide.
double area;
if (string.IsNullOrWhiteSpace(peptideName) || !double.TryParse(peakArea, out area))
{
continue;
}
if (_selectedReplicate == replicateName || _selectedReplicate == "All") // Not L10N
{
// Add area to sum that was previously created.
if (peptideAreas.ContainsKey(peptideName))
{
peptideAreas[peptideName] += area;
}
// Create a sum for a new peptide.
else
{
_peptides.Add(peptideName);
_peptideLinks.Add(peptideLocation);
_replicateLinks.Add(replicateLocation);
peptideAreas[peptideName] = area;
}
}
// Record unique replicate names.
if (!replicates.Contains(replicateName))
{
replicates.Add(replicateName);
}
}
// Rebuild Replicates menu.
var items = replicatesToolStripMenuItem.DropDownItems;
items.Clear();
items.Add("All"); // Not L10N
items.Add("-"); // Not L10N
replicates.Sort();
foreach (var replicate in replicates)
{
items.Add(replicate);
}
// Put a check on the selected replicate.
if (!replicates.Contains(_selectedReplicate))
{
_selectedReplicate = "All"; // Not L10N
}
SelectReplicate(_selectedReplicate);
// Create array of peak areas in same order as peptide names.
var areas = new double[_peptides.Count];
for (int i = 0; i < areas.Length; i++)
{
areas[i] = peptideAreas[_peptides[i]];
}
// Generate unique prefixes for each peptide name.
var prefixGenerator = new UniquePrefixGenerator(_peptides, 3);
// Create bar graph showing summed peak area for each peptide.
_graph.CreateBars(_peptides.Select(prefixGenerator.GetUniquePrefix).ToArray(), areas);
}
/// <summary>
/// Create bar graph showing peak areas.
/// </summary>
private void CreateGraph()
{
if (_toolClient == null)
return;
// Retrieve the current report.
IReport report = _toolClient.GetReport("Peak Area"); // Not L10N
// Get the same report, more dynamically.
var reportStream = typeof(MainForm).Assembly.GetManifestResourceStream("ExampleInteractiveTool.tool_inf.ExampleTool_report.skyr"); // Not L10N
if (reportStream == null)
return;
var reader = new StreamReader(reportStream);
IReport report2 = _toolClient.GetReportFromDefinition(reader.ReadToEnd());
AssertReportsEquals(report, report2);
_peptides = new List<string>();
_peptideLinks = new List<string>();
_replicateLinks = new List<string>();
var replicates = new List<string>();
var peptideAreas = new Dictionary<string, double>();
foreach (var row in report.Cells)
{
// Get report fields.
var peptideName = row[0];
var peakArea = row[1];
var peptideLocation = row[2];
var replicateName = row[3];
var replicateLocation = row[4];
// Get the name of this peptide.
double area;
if (string.IsNullOrWhiteSpace(peptideName) || !double.TryParse(peakArea, out area))
continue;
if (_selectedReplicate == replicateName || _selectedReplicate == "All") // Not L10N
{
// Add area to sum that was previously created.
if (peptideAreas.ContainsKey(peptideName))
peptideAreas[peptideName] += area;
// Create a sum for a new peptide.
else
{
_peptides.Add(peptideName);
_peptideLinks.Add(peptideLocation);
_replicateLinks.Add(replicateLocation);
peptideAreas[peptideName] = area;
}
}
// Record unique replicate names.
if (!replicates.Contains(replicateName))
replicates.Add(replicateName);
}
// Rebuild Replicates menu.
var items = replicatesToolStripMenuItem.DropDownItems;
items.Clear();
items.Add("All"); // Not L10N
items.Add("-"); // Not L10N
replicates.Sort();
foreach (var replicate in replicates)
items.Add(replicate);
// Put a check on the selected replicate.
if (!replicates.Contains(_selectedReplicate))
_selectedReplicate = "All"; // Not L10N
SelectReplicate(_selectedReplicate);
// Create array of peak areas in same order as peptide names.
var areas = new double[_peptides.Count];
for (int i = 0; i < areas.Length; i++)
areas[i] = peptideAreas[_peptides[i]];
// Generate unique prefixes for each peptide name.
var prefixGenerator = new UniquePrefixGenerator(_peptides, 3);
// Create bar graph showing summed peak area for each peptide.
_graph.CreateBars(_peptides.Select(prefixGenerator.GetUniquePrefix).ToArray(), areas);
}
