public void Add(EntropyProfile profile)
{
this._profiles.Add(profile);
for (int i = 0; i < profile.states.Count; i++)
{
var index = states.IndexOf(profile.states[i]);
if (index == -1)
{
this.states.Add(profile.states[i]);
this.statesCount.Add(1);
}
else
{
this.statesCount[index]++;
}
}
this.totalStates += profile.totalStates;
this.statesProbabilities = new List<float>();
for (int i = 0; i < statesCount.Count; i++)
this.statesProbabilities.Add((1.0f * statesCount[i]) / (1.0f * this.totalStates));
}
public FastaObj updateEntropyProfile(int width, int velocity)
{
this.entropyProfile = new EntropyProfile(this.sequence, ProteinHelper.AminoAcidCharStrings, width, velocity);
return this;
}