public SmartChromPeakSelector(SmartChromPeakSelectorParameters parameters)
{
this.Parameters = parameters;
MSPeakDetector = new DeconToolsPeakDetectorV2(parameters.MSPeakDetectorPeakBR, parameters.MSPeakDetectorSigNoiseThresh, DeconTools.Backend.Globals.PeakFitType.QUADRATIC, true);
var iterativeTFFParams = new IterativeTFFParameters();
iterativeTFFParams.ToleranceInPPM = parameters.MSToleranceInPPM;
iterativeTFFParams.MinimumRelIntensityForForPeakInclusion = parameters.IterativeTffMinRelIntensityForPeakInclusion;
if (parameters.MSFeatureFinderType == DeconTools.Backend.Globals.TargetedFeatureFinderType.BASIC)
{
throw new NotSupportedException("Currently the Basic TFF is not supported in the SmartChromPeakSelector");
//TargetedMSFeatureFinder = new TargetedFeatureFinders.BasicTFF(parameters.MSToleranceInPPM);
}
else
{
TargetedMSFeatureFinder = new IterativeTFF(iterativeTFFParams);
}
resultValidator = new ResultValidatorTask();
fitScoreCalc = new IsotopicProfileFitScoreCalculator();
InterferenceScorer = new InterferenceScorer();
}
public SmartChromPeakSelectorUIMF(SmartChromPeakSelectorParameters parameters)
: base(parameters)
{
}
public IqSmartChromPeakSelector(SmartChromPeakSelectorParameters parameters) : base(parameters)
{
}