public void xcaliburSpeed_RAPID_Test1()
{
Run run = new XCaliburRun(xcaliburTestfile);
int startScan = 6005;
int stopScan = 7000;
int numScansSummed = 1;
ScanSetCollectionCreator scanSetCreator = new ScanSetCollectionCreator(run, startScan, stopScan, numScansSummed, 1);
scanSetCreator.Create();
ResultCollection results = new ResultCollection(run);
List <timingResult> timingResults = new List <timingResult>();
System.Diagnostics.Stopwatch sw = new System.Diagnostics.Stopwatch();
foreach (ScanSet scanset in run.ScanSetCollection.ScanSetList)
{
if (results.Run.GetMSLevel(scanset.PrimaryScanNumber) != 1)
{
continue;
}
sw.Reset();
timingResult timeresult = new timingResult();
timeresult.frameNum = -1;
timeresult.scanNum = scanset.PrimaryScanNumber;
sw.Start();
run.CurrentScanSet = scanset;
Task msgen = new GenericMSGenerator();
msgen.Execute(results);
timeresult.msGenTime = sw.ElapsedMilliseconds;
sw.Reset();
sw.Start();
Task peakDetector = new DeconToolsPeakDetector();
peakDetector.Execute(results);
timeresult.peakDetectorTime = sw.ElapsedMilliseconds;
sw.Reset();
sw.Start();
Task rapid = new RapidDeconvolutor();
rapid.Execute(results);
timeresult.deconTime = sw.ElapsedMilliseconds;
sw.Reset();
sw.Start();
Task scanResultUpdater = new ScanResultUpdater();
scanResultUpdater.Execute(results);
timeresult.resultUpdaterTime = sw.ElapsedMilliseconds;
timingResults.Add(timeresult);
}
reportTimingEachScan(timingResults);
}
public void xcaliburSpeed_THRASH_Test1()
{
Run run = new XCaliburRun(xcaliburTestfile);
int startScan = 6005;
int stopScan = 6050;
int numScansSummed = 1;
ScanSetCollectionCreator scanSetCreator = new ScanSetCollectionCreator(run, startScan, stopScan, numScansSummed, 1);
scanSetCreator.Create();
ResultCollection results = new ResultCollection(run);
List <timingResult> timingResults = new List <timingResult>();
System.Diagnostics.Stopwatch sw = new System.Diagnostics.Stopwatch();
foreach (ScanSet scanset in run.ScanSetCollection.ScanSetList)
{
if (results.Run.GetMSLevel(scanset.PrimaryScanNumber) != 1)
{
continue;
}
sw.Reset();
timingResult timeresult = new timingResult();
timeresult.frameNum = -1;
timeresult.scanNum = scanset.PrimaryScanNumber;
sw.Start();
run.CurrentScanSet = scanset;
Task msgen = new GenericMSGenerator();
msgen.Execute(results);
timeresult.msGenTime = sw.ElapsedMilliseconds;
sw.Reset();
sw.Start();
Task peakDetector = new DeconToolsPeakDetector();
peakDetector.Execute(results);
timeresult.peakDetectorTime = sw.ElapsedMilliseconds;
sw.Reset();
sw.Start();
DeconToolsV2.HornTransform.clsHornTransformParameters hornParams = new DeconToolsV2.HornTransform.clsHornTransformParameters();
Task decon = new HornDeconvolutor(hornParams);
decon.Execute(results);
timeresult.deconTime = sw.ElapsedMilliseconds;
sw.Reset();
sw.Start();
Task scanResultUpdater = new ScanResultUpdater();
scanResultUpdater.Execute(results);
timeresult.resultUpdaterTime = sw.ElapsedMilliseconds;
timingResults.Add(timeresult);
}
reportTimingEachScan(timingResults);
/*
* results on Gord's computer... 2009_11_18.
* scanNum msgen peakDet decon updater
* 6005 85 72 3013 3
* 6012 13 6 2661 0
* 6019 13 9 2908 0
* 6026 12 11 2560 0
* 6033 14 9 2778 0
* 6040 13 6 2558 0
* 6047 12 8 2753 0
*
* Avg: 23.1 17.3 2747.3 0.4
*/
}
public void msGeneratorSummingTest1()
{
Run run = new UIMFRun(uimfFilePath3);
int startFrame = 800;
int stopFrame = 802;
int numFramesSummed = 3;
int numScansSummed = 9;
FrameSetCollectionCreator framesetCreator = new FrameSetCollectionCreator(run, startFrame, stopFrame, numFramesSummed, 1);
framesetCreator.Create();
ScanSetCollectionCreator scanSetCreator = new ScanSetCollectionCreator(run, numScansSummed, 1);
scanSetCreator.Create();
ResultCollection results = new ResultCollection(run);
List <timingResult> timingResults = new List <timingResult>();
Task msgen = new UIMF_MSGenerator();
Task peakDetector = new DeconToolsPeakDetector();
Task decon = new HornDeconvolutor();
Task scanResultUpdater = new ScanResultUpdater();
Task uimfTicExtractor = new UIMF_TICExtractor();
Task driftTimeExtractor = new DeconTools.Backend.ProcessingTasks.UIMFDriftTimeExtractor();
((HornDeconvolutor)decon).MinPeptideBackgroundRatio = 4;
foreach (FrameSet frameset in ((UIMFRun)run).FrameSetCollection.FrameSetList)
{
System.Diagnostics.Stopwatch sw = new System.Diagnostics.Stopwatch();
((UIMFRun)run).CurrentFrameSet = frameset;
foreach (ScanSet scanset in run.ScanSetCollection.ScanSetList)
{
sw.Reset();
timingResult timeresult = new timingResult();
timeresult.frameNum = frameset.PrimaryFrame;
timeresult.scanNum = scanset.PrimaryScanNumber;
sw.Start();
run.CurrentScanSet = scanset;
msgen.Execute(results);
timeresult.msGenTime = sw.ElapsedMilliseconds;
sw.Reset();
sw.Start();
peakDetector.Execute(results);
timeresult.peakDetectorTime = sw.ElapsedMilliseconds;
sw.Reset();
sw.Start();
decon.Execute(results);
timeresult.deconTime = sw.ElapsedMilliseconds;
sw.Reset();
sw.Start();
scanResultUpdater.Execute(results);
timeresult.resultUpdaterTime = sw.ElapsedMilliseconds;
sw.Reset();
sw.Start();
uimfTicExtractor.Execute(results);
timeresult.ticExtractorTime = sw.ElapsedMilliseconds;
sw.Reset();
sw.Start();
driftTimeExtractor.Execute(results);
timeresult.driftTimeExtractorTime = sw.ElapsedMilliseconds;
timingResults.Add(timeresult);
}
}
//reportTimingEachFrameEachScan(timingResults);
Console.WriteLine("Total _isos = " + results.ResultList.Count);
Console.WriteLine("PeptideBR = " + ((HornDeconvolutor)decon).MinPeptideBackgroundRatio);
Console.WriteLine();
Console.WriteLine();
Console.WriteLine();
reportTiming_FrameAggregate(timingResults, startFrame, stopFrame);
Project.Reset();
}
