public PeakDetectAndExportWorkflow(Run run, PeakDetectAndExportWorkflowParameters parameters)
{
WorkflowParameters = parameters;
Run = run;
if (Run.MSFileType == Globals.MSFileType.PNNL_UIMF)
{
throw new NotSupportedException("PeakDetectAndExportWorkflow does not currently support UIMF files. NOTE to developer: need to add code for defining LC scans and IMS scans to iterate over.");
}
}
private void CreatePeaksFile(PeakDetectorParameters peakDetectorParameters, string outputFolderPath)
{
var parameters = new PeakDetectAndExportWorkflowParameters
{
OutputFolder = outputFolderPath,
LCScanMin = Run.MinLCScan,
LCScanMax = Run.MaxLCScan,
IsDataThresholded = Run.IsDataThresholded,
ProcessMSMS = false,
PeakBR = peakDetectorParameters.PeakToBackgroundRatio,
Num_LC_TimePointsSummed = 1,
SigNoiseThreshold = peakDetectorParameters.SignalToNoiseThreshold
};
var peakDetectAndExporter = new PeakDetectAndExportWorkflow(Run, parameters);
peakDetectAndExporter.Execute();
}
public PeakDetectAndExportWorkflow(Run run, PeakDetectAndExportWorkflowParameters parameters, BackgroundWorker bw)
: this(run, parameters)
{
backgroundWorker = bw;
peakProgressInfo = new PeakProgressInfo();
}