public IterativeTFF(IterativeTFFParameters parameters)
{
PeakBRStep = parameters.PeakBRStep;
var peakDetectorIsDataThresholded = parameters.PeakDetectorIsDataThresholded;
var peakDetectorSigNoiseRatioThreshold = parameters.PeakDetectorSigNoiseRatioThreshold;
PeakDetectorPeakBR = parameters.PeakDetectorPeakBR;
var peakDetectorPeakFitType = parameters.PeakDetectorPeakFitType;
PeakBRMin = parameters.PeakDetectorMinimumPeakBR;
MaxPeaksToInclude = 30;
MinRelIntensityForPeakInclusion = parameters.MinimumRelIntensityForForPeakInclusion;
NeedMonoIsotopicPeak = parameters.RequiresMonoIsotopicPeak;
ToleranceInPPM = parameters.ToleranceInPPM;
NumPeaksUsedInAbundance = parameters.NumPeaksUsedInAbundance;
IsotopicProfileType = parameters.IsotopicProfileType;
MSPeakDetector = new DeconToolsPeakDetectorV2(PeakDetectorPeakBR, peakDetectorSigNoiseRatioThreshold,
peakDetectorPeakFitType, peakDetectorIsDataThresholded);
//this.MSPeakDetector = new DeconToolsPeakDetectorV2();
//this.MSPeakDetector.PeakToBackgroundRatio = PeakDetectorPeakBR;
//this.MSPeakDetector.SignalToNoiseThreshold = _peakDetectorSigNoiseRatioThreshold;
//this.MSPeakDetector.IsDataThresholded = _peakDetectorIsDataThresholded;
//this.MSPeakDetector.PeakFitType = _peakDetectorPeakFitType;
}
public SipperIterativeMSFeatureFinder(IterativeTFFParameters parameters)
: base(parameters)
{
ToleranceInPPM = parameters.ToleranceInPPM;
}
public O16O18IterativeTff(IterativeTFFParameters parameters)
: base(parameters)
{
_iterativeTffStandard = new IterativeTFF(parameters);
}
public O16O18TargetedIterativeFeatureFinder(IterativeTFFParameters parameters) : base(parameters)
{
ToleranceInPPM = parameters.ToleranceInPPM;
_iterativeTFFStandard = new IterativeTFF(parameters);
}
public SipperIterativeMSFeatureFinder(IterativeTFFParameters parameters)
: base(parameters)
{
// ReSharper disable once VirtualMemberCallInConstructor
ToleranceInPPM = parameters.ToleranceInPPM;
}
