public override void Export(string binaryResultCollectionFilename, bool deleteBinaryFileAfterUse)
{
Check.Require(File.Exists(binaryResultCollectionFilename), "Can't write _isos; binaryResultFile doesn't exist: " + Utilities.DiagnosticUtilities.GetFullPathSafe(binaryResultCollectionFilename));
StreamWriter sw;
try
{
sw = new StreamWriter(this.fileName);
}
catch (Exception ex)
{
throw new System.IO.IOException("Isos Exporter cannot export; Check if file is already opened. Details: " + ex.Message);
}
sw.WriteLine(headerLine);
ResultCollection results;
var deserializer = new IsosResultDeSerializer(binaryResultCollectionFilename);
do
{
results = deserializer.GetNextSetOfResults();
//OriginalIntensitiesExtractor origIntensExtractor = new OriginalIntensitiesExtractor(results);
//List<OriginalIntensitiesDTO> origIntensitiesCollection = origIntensExtractor.ExtractOriginalIntensities();
//writeUIMFIsosResults(sw, results, origIntensitiesCollection);
} while (results != null);
sw.Close();
deserializer.Close();
if (deleteBinaryFileAfterUse)
{
try
{
if (File.Exists(binaryResultCollectionFilename))
{
File.Delete(binaryResultCollectionFilename);
}
}
catch (Exception ex)
{
throw new System.IO.IOException("Exporter could not delete binary file. Details: " + ex.Message);
}
}
}
public override void Export(string binaryResultCollectionFilename, bool deleteBinaryFileAfterUse)
{
Check.Require(File.Exists(binaryResultCollectionFilename), "Can't write _isos; binaryResultFile doesn't exist: " + Utilities.DiagnosticUtilities.GetFullPathSafe(binaryResultCollectionFilename));
try
{
sqliteWriter.CreateNewDB(fileName);
}
catch (Exception ex)
{
throw new System.IO.IOException("Isos Exporter cannot export; Check if file is already opened. Details: " + ex.Message);
}
ResultCollection results;
var deserializer = new IsosResultDeSerializer(binaryResultCollectionFilename);
do
{
results = deserializer.GetNextSetOfResults();
exportSQLiteUIMFIsosResults(results);
} while (results != null);
sqliteWriter.CloseDB(fileName);
deserializer.Close();
if (deleteBinaryFileAfterUse)
{
try
{
if (File.Exists(binaryResultCollectionFilename))
{
File.Delete(binaryResultCollectionFilename);
}
}
catch (Exception ex)
{
throw new System.IO.IOException("Exporter could not delete binary file. Details: " + ex.Message);
}
}
}
