protected override void CreateScansets(Run run, int scanStart, int scanStop, int numScansSummed, int scanIncrement, bool processMSMS = false, bool sumConsecutiveMsMs = true)
{
ScanSetList = new List <ScanSet>();
var minPossibleScanIndex = GetMinScan(run);
var maxPossibleScanIndex = GetMaxScan(run);
var numLowerScansToGet = (numScansSummed - 1) / 2;
var numUpperScansToGet = (numScansSummed - 1) / 2;
for (var currentScan = scanStart; currentScan <= scanStop; currentScan++)
{
//add lower scans
var lowerScan = currentScan - 1;
var scansToSum = new List <int>();
var scansCounter = 0;
while (lowerScan >= minPossibleScanIndex && numLowerScansToGet > scansCounter)
{
scansToSum.Insert(0, lowerScan);
scansCounter++;
lowerScan--;
}
//add middle scan
scansToSum.Add(currentScan);
//add upper scans
scansCounter = 0;
var upperScan = currentScan + 1;
while (upperScan <= maxPossibleScanIndex && numUpperScansToGet > scansCounter)
{
scansToSum.Add(upperScan);
scansCounter++;
upperScan++;
}
var scanSet = new IMSScanSet(currentScan, scansToSum.ToArray());
ScanSetList.Add(scanSet);
}
}
/// <summary>
/// Constructor that takes run, LC scan set, and an IMS scan set
/// </summary>
/// <param name="run"></param>
/// <param name="lcScanSet"></param>
/// <param name="scanSet"></param>
public UIMFIsosResult(Run run, ScanSet lcScanSet, IMSScanSet scanSet)
{
Run = run;
ScanSet = lcScanSet;
IMSScanSet = scanSet;
}
public UIMFIsosResult(Run run, ScanSet lcScanset, IMSScanSet scanset)
{
this.Run = run;
this.ScanSet = lcScanset;
this.IMSScanSet = scanset;
}