public async Task OrganizeAsync(DicomOrganizerOptions options, CancellationToken cancellationToken)
{
var parallelism = options.Parallelism;
if (!options.Directory.Exists)
{
throw new DicomOrganizeException($"Target directory does not exist: {options.Directory.FullName}");
}
var filesChannel = Channel.CreateUnbounded <FileInfo>(new UnboundedChannelOptions
{
SingleWriter = true,
SingleReader = false
});
var tasks = new List <Task>
{
Task.Run(() => ProduceAsync(filesChannel.Writer, options, cancellationToken), cancellationToken)
};
for (var i = 0; i < parallelism; i++)
{
tasks.Add(
Task.Run(() => ConsumeAsync(filesChannel.Reader, options, cancellationToken), cancellationToken)
);
}
await Task.WhenAll(tasks).ConfigureAwait(false);
}
private async Task ProduceAsync(ChannelWriter <FileInfo> filesChannelWriter, DicomOrganizerOptions dicomOrganizerOptions, CancellationToken cancellationToken)
{
var files = dicomOrganizerOptions.Files?.AsAsyncEnumerable() ?? _filesFromConsoleInputReader.Read(cancellationToken);
await foreach (var file in files.WithCancellation(cancellationToken))
{
await filesChannelWriter.WriteAsync(file, cancellationToken).ConfigureAwait(false);
}
}
public Task ExecuteAsync(IConsole console, DicomOrganizerOptions dicomOrganizerOptions, CancellationToken cancellationToken)
{
var dicomTagParser = new DicomTagParser();
var folderNameCleaner = new FolderNameCleaner();
var patternApplier = new PatternApplier(dicomTagParser, folderNameCleaner);
var errorHandler = dicomOrganizerOptions.ErrorMode == ErrorMode.Continue
? (IErrorHandler) new ContinueErrorHandler(console)
: new StopErrorHandler();
var logger = new Logger(console);
var dicomOrganizer = new DicomOrganizer(patternApplier, errorHandler, logger, _filesFromConsoleInputReader);
return(dicomOrganizer.OrganizeAsync(dicomOrganizerOptions, cancellationToken));
}
private async Task ConsumeAsync(ChannelReader <FileInfo> filesChannelReader, DicomOrganizerOptions options, CancellationToken cancellationToken)
{
if (filesChannelReader == null)
{
throw new ArgumentNullException(nameof(filesChannelReader));
}
if (options == null)
{
throw new ArgumentNullException(nameof(options));
}
while (await filesChannelReader.WaitToReadAsync(cancellationToken))
{
while (filesChannelReader.TryRead(out var file))
{
cancellationToken.ThrowIfCancellationRequested();
await OrganizeFileAsync(file, options, cancellationToken);
}
}
}
private async Task OrganizeFileAsync(FileInfo file, DicomOrganizerOptions options, CancellationToken cancellationToken)
{
var directory = options.Directory;
var pattern = options.Pattern;
var action = options.Action;
DicomFile dicomFile;
try
{
await using var fileStream = new FileStream(file.FullName, FileMode.Open, FileAccess.Read, FileShare.Read, 4096);
dicomFile = await DicomFile.OpenAsync(fileStream, FileReadOption.SkipLargeTags);
}
catch (DicomFileException e)
{
throw new DicomOrganizeException("Not a DICOM file: " + file.FullName, e);
}
string fileName;
try
{
fileName = _patternApplier.Apply(dicomFile.Dataset, pattern);
}
catch (PatternException e)
{
throw new DicomOrganizeException($"Failed to apply pattern to file {file}", e);
}
var targetFile = new FileInfo(Path.Join(directory.FullName, fileName));
if (!targetFile.Directory !.Exists)
{
var highestDirectoryName = HighestDirectoryNameDeterminer.Determine(fileName !);
using (await KeyedSemaphore.LockAsync(highestDirectoryName, cancellationToken))
{
try
{
if (!targetFile.Directory.Exists)
{
var directoryToCreate = targetFile.Directory !;
_ioPolicy.Execute(() => directoryToCreate.Create());
}
}
catch (IOException exception)
{
throw new DicomOrganizeException($"Failed to create directory {targetFile.Directory.FullName}", exception);
}
}
}
if (file.FullName == targetFile.FullName)
{
_logger.WriteLine(targetFile.FullName);
return;
}
if (targetFile.Exists)
{
var counter = 1;
var targetFileName = targetFile.Name;
var targetFileDirectoryName = targetFile.Directory.FullName;
var targetFileExtension = targetFile.Extension;
var targetFileNameWithoutExtension = targetFileName.Substring(0, targetFileName.Length - targetFileExtension.Length);
while (targetFile.Exists)
{
targetFileName = $"{targetFileNameWithoutExtension} ({counter++}){targetFile.Extension}";
targetFile = new FileInfo(Path.Join(targetFileDirectoryName, targetFileName));
if (file.FullName == targetFile.FullName)
{
_logger.WriteLine(targetFile.FullName);
return;
}
}
}
try
{
switch (action)
{
case Action.Move:
{
_ioPolicy.Execute(() => File.Move(file.FullName, targetFile.FullName));
_logger.WriteLine(targetFile.FullName);
break;
}
case Action.Copy:
{
_ioPolicy.Execute(() => File.Copy(file.FullName, targetFile.FullName));
_logger.WriteLine(targetFile.FullName);
break;
}
}
}
catch (IOException e)
{
_errorHandler.Handle(new DicomOrganizeException($"Failed to {action.ToString().ToLowerInvariant()} {file}", e));
}
}
