/// <summary>
/// Updates the mesophyll CO2 parameter
/// </summary>
protected virtual void UpdateMesophyllCO2(AssimilationPathway pathway, TemperatureResponse leaf)
{ /*C4 & CCM overwrite this.*/
}
/// <summary> /// Retrieves a function describing assimilation along the Aj pathway /// </summary> protected abstract AssimilationFunction GetAjFunction(AssimilationPathway pathway, TemperatureResponse leaf);
/// <inheritdoc/>
public virtual void UpdateIntercellularCO2(AssimilationPathway pathway, double gt, double waterUseMolsSecond)
{ /*C4 & CCM overwrite this.*/
}
/// <inheritdoc/>
protected override void UpdateChloroplasticO2(AssimilationPathway pathway)
{
pathway.ChloroplasticO2 = parameters.PS2ActivityFraction * pathway.CO2Rate / (canopy.DiffusivitySolubilityRatio * pathway.Gbs) + canopy.AirO2;
}
/// <inheritdoc/>
protected override AssimilationFunction GetAc2Function(AssimilationPathway pathway, TemperatureResponse leaf)
{
throw new Exception("The C3 model does not use the Ac2 pathway");
}
/// <inheritdoc/>
protected override void UpdateMesophyllCO2(AssimilationPathway pathway, TemperatureResponse leaf)
{
pathway.MesophyllCO2 = pathway.IntercellularCO2 - pathway.CO2Rate / leaf.GmT;
}
/// <inheritdoc/>
public override void UpdateIntercellularCO2(AssimilationPathway pathway, double gt, double waterUseMolsSecond)
{
pathway.IntercellularCO2 = ((gt - waterUseMolsSecond / 2.0) * canopy.AirCO2 - pathway.CO2Rate) / (gt + waterUseMolsSecond / 2.0);
}
/// <summary>
/// Updates the chloroplastic CO2 parameter
/// </summary>
protected virtual void UpdateChloroplasticCO2(AssimilationPathway pathway, AssimilationFunction func)
{ /*CCM overwrites this.*/
}
/// <summary>
/// Updates the chloroplastic O2 parameter
/// </summary>
protected virtual void UpdateChloroplasticO2(AssimilationPathway pathway)
{ /*CCM overwrites this.*/
}
/// <inheritdoc/>
public void UpdatePartialPressures(AssimilationPathway pathway, TemperatureResponse leaf, AssimilationFunction function)
{
UpdateMesophyllCO2(pathway, leaf);
UpdateChloroplasticO2(pathway);
UpdateChloroplasticCO2(pathway, function);
}