/// <summary>
/// constructor
/// </summary>
public VepSimpleIntervalReader(string filePath, string description, GlobalImportCommon.FileType fileType)
{
// sanity check
if (!File.Exists(filePath))
{
throw new FileNotFoundException($"The specified intron file ({filePath}) does not exist.");
}
// open the vcf file and parse the header
_reader = GZipUtilities.GetAppropriateStreamReader(filePath);
VepReaderCommon.GetHeader(description, filePath, fileType, _reader);
}
/// <summary>
/// constructor
/// </summary>
public VepRegulatoryReader(string filePath)
{
// sanity check
if (!File.Exists(filePath))
{
throw new FileNotFoundException($"The specified exon file ({filePath}) does not exist.");
}
// open the vcf file and parse the header
_reader = GZipUtilities.GetAppropriateStreamReader(filePath);
VepReaderCommon.GetHeader("regulatory element", filePath, GlobalImportCommon.FileType.Regulatory, _reader);
}