public SampleInfo ReadInfo()
{
SampleInfo infos = new SampleInfo();
string sConfigFilePath = GetExeFolder() + "\\setting.csv";
if (!File.Exists(sConfigFilePath))
{
log.Error("Setting file does not exist!");
return null;
}
bool bFirstRow = true;
using (StreamReader sr = new StreamReader(sConfigFilePath, System.Text.Encoding.Default))
{
string sContent = "";
while (true)
{
sContent = sr.ReadLine();
if (sContent == null)
break;
if (bFirstRow)
{
bFirstRow = false;
}
else
{
return ExtractInfo(sContent.Split(',').ToList() );
//infos.Add(sContent.Split(',').ToList());
}
}
}
return null;
}
public SampleInfo ReadInfo()
{
SampleInfo infos = new SampleInfo();
string sConfigFilePath = GetExeFolder() + "\\setting.csv";
if (!File.Exists(sConfigFilePath))
{
log.Error("Setting file does not exist!");
return(null);
}
bool bFirstRow = true;
using (StreamReader sr = new StreamReader(sConfigFilePath, System.Text.Encoding.Default))
{
string sContent = "";
while (true)
{
sContent = sr.ReadLine();
if (sContent == null)
{
break;
}
if (bFirstRow)
{
bFirstRow = false;
}
else
{
return(ExtractInfo(sContent.Split(',').ToList()));
//infos.Add(sContent.Split(',').ToList());
}
}
}
return(null);
}
private SampleInfo ExtractInfo(List<string> list)
{
SampleInfo info = new SampleInfo();
for (int i = 0; i < list.Count; i++)
{
int val = int.Parse(list[i]);
switch (i)
{
case 0:
info.ID = val;
break;
case 1:
info.bloodPlasmaSlice = val;
break;
case 2:
info.buffyCoatSlice = val;
break;
}
}
return info;
}
private void ReadZValues(ref List <SampleInfo> infos)
{
//1st get the lines count
string sReportFile = @"C:\BuffyEx\data\LastReport.txt";
int lineCount = 0;
using (StreamReader sr = new StreamReader(sReportFile))
{
while (true)
{
string s = sr.ReadLine();
if (s == null)
{
break;
}
lineCount++;
}
}
int nSamples = (lineCount - 1) / 2;
for (int i = 0; i < nSamples - 1; i++)
{
SampleInfo curInfo = new SampleInfo();
curInfo.bloodPlasmaSlice = infos[0].bloodPlasmaSlice;
curInfo.buffyCoatSlice = infos[0].buffyCoatSlice;
curInfo.ID = infos.Count + 1;
infos.Add(curInfo);
}
using (StreamReader sr = new StreamReader(sReportFile))
{
string sContent = "";
bool bFirstRow = true;
int nHeightColumn = 0;
int curRow = 0;
while (true)
{
sContent = sr.ReadLine();
if (sContent == null)
{
break;
}
if (bFirstRow)
{
bFirstRow = false;
nHeightColumn = GetHeightColumn(sContent);
}
else
{
int infoIndex = (curRow - 1) % nSamples;
if (infoIndex < infos.Count)
{
string[] vals = sContent.Split('\t');
if (curRow < (lineCount + 1) / 2)
{
infos[infoIndex].Z1 = double.Parse(vals[nHeightColumn]) * 10;
}
else
{
infos[infoIndex].Z2 = double.Parse(vals[nHeightColumn]) * 10;
}
}
}
curRow++;
}
}
}
private void generateForSample(SampleInfo sampleInfo)
{
string sOutput = Path.GetDirectoryName(Assembly.GetExecutingAssembly().Location) + "\\output\\";
//create folders
if (!Directory.Exists(sOutput))
Directory.CreateDirectory(sOutput);
sOutput = sOutput + "\\"+ sampleInfo.ID.ToString()+"\\";
if (!Directory.Exists(sOutput))
Directory.CreateDirectory(sOutput);
double r = pipettingSetting.r_mm;
double area = 3.14159265 * r * r;
double volumeBloodPlasma = Math.Abs(( sampleInfo.Z1 - sampleInfo.Z2) * area ); //ul
Write2File(sOutput + "plasmaDstSliceCount.txt", sampleInfo.bloodPlasmaSlice.ToString());
Write2File(sOutput + "buffyDstSliceCount.txt", sampleInfo.buffyCoatSlice.ToString());
Write2File(sOutput + "buffyLayerCount.txt", pipettingSetting.buffyAspirateLayers.ToString());
Write2File(sOutput + "plasmaEachVolume.txt", (volumeBloodPlasma/sampleInfo.bloodPlasmaSlice).ToString());
Write2File(sOutput + "eachLayerPointCount.txt", pipettingSetting.pointsCount.ToString());
Write2File(sOutput + "Z1.txt", sampleInfo.Z1.ToString());
Write2File(sOutput + "Z2.txt", sampleInfo.Z2.ToString());
using(StreamWriter sw = new StreamWriter(sOutput + "xyMoves.txt"))
{
List<POINT>pts = GenerateAspiratePts(r);
//for each layer, move x,y then aspirate, then move z
for (int layer = 0; layer < sampleInfo.buffyCoatSlice; layer++)
{
//bool needDispense = (layer + 1) % (sampleInfo.buffyCoatSlice / 2) == 0;
foreach (POINT pt in pts)
{
log.InfoFormat("Pt position is:{0} , {1} ", pt.x, pt.y);
if( layer == 0)
sw.WriteLine(string.Format("{0},{1}",(int)pt.x,(int)pt.y));
}
}
}
}
private void ReadZValues(ref List<SampleInfo> infos)
{
//1st get the lines count
string sReportFile = @"C:\BuffyEx\data\LastReport.txt";
int lineCount = 0;
using (StreamReader sr = new StreamReader(sReportFile))
{
while(true)
{
string s = sr.ReadLine();
if( s == null)
break;
lineCount++;
}
}
int nSamples = (lineCount - 1) / 2;
for (int i = 0; i < nSamples - 1; i++)
{
SampleInfo curInfo = new SampleInfo();
curInfo.bloodPlasmaSlice = infos[0].bloodPlasmaSlice;
curInfo.buffyCoatSlice = infos[0].buffyCoatSlice;
curInfo.ID = infos.Count+1;
infos.Add(curInfo);
}
using (StreamReader sr = new StreamReader(sReportFile))
{
string sContent = "";
bool bFirstRow = true;
int nHeightColumn = 0;
int curRow = 0;
while (true)
{
sContent = sr.ReadLine();
if (sContent == null)
break;
if (bFirstRow)
{
bFirstRow = false;
nHeightColumn = GetHeightColumn(sContent);
}
else
{
int infoIndex = (curRow - 1) % nSamples;
if (infoIndex < infos.Count)
{
string[] vals = sContent.Split('\t');
if (curRow < (lineCount + 1) / 2)
infos[infoIndex].Z1 = double.Parse(vals[nHeightColumn])*10 ;
else
infos[infoIndex].Z2 = double.Parse(vals[nHeightColumn])*10 ;
}
}
curRow++;
}
}
}
