Ejemplo n.º 1
0
 /// <summary>
 /// Reads ambiguously placed due to genomic reads.
 /// This step requires mate pair information to resolve the ambiguity about placements of repeated sequences.
 /// </summary>
 /// <param name="deltaAlignmentCollection">Alignment between reference genome and reads.</param>
 /// <returns>List of DeltaAlignments after resolving repeating reads.</returns>
 private static IEnumerable <DeltaAlignment> RepeatResolution(DeltaAlignmentCollection deltaAlignmentCollection)
 {
     return(RepeatResolver.ResolveAmbiguity(deltaAlignmentCollection));
 }
Ejemplo n.º 2
0
 /// <summary>
 /// Reads ambiguously placed due to genomic reads.
 /// This step requires mate pair information to resolve the ambiguity about placements of repeated sequences.
 /// </summary>
 /// <param name="alignmentBetweenReferenceAndReads">Alignment between reference genome and reads.</param>
 /// <returns>List of DeltaAlignments after resolving repeating reads.</returns>
 private List <DeltaAlignment> RepeatResolution(IList <IEnumerable <DeltaAlignment> > alignmentBetweenReferenceAndReads)
 {
     return(RepeatResolver.ResolveAmbiguity(alignmentBetweenReferenceAndReads));
 }