private PanageaMetadata getMetadata(XmlDocument metadata, long metadataStructureId)
{
List <string> tmp = new List <string>();
PanageaMetadata pangaeaMetadata = new PanageaMetadata();
//get title
tmp = MappingUtils.GetValuesFromMetadata((int)Key.Title, LinkElementType.Key,
metadataStructureId, XmlUtility.ToXDocument(metadata));
if (tmp != null)
{
pangaeaMetadata.Title = string.Join(",", tmp.ToArray());
}
//get Description
tmp = MappingUtils.GetValuesFromMetadata((int)Key.Description, LinkElementType.Key,
metadataStructureId, XmlUtility.ToXDocument(metadata));
if (tmp != null)
{
pangaeaMetadata.Abstract = string.Join(",", tmp.ToArray());
}
// get Authors
tmp = MappingUtils.GetValuesFromMetadata((int)Key.Author, LinkElementType.Key,
metadataStructureId, XmlUtility.ToXDocument(metadata));
if (tmp != null)
{
pangaeaMetadata.AuthorIDs = tmp;
}
// get Projects
tmp = MappingUtils.GetValuesFromMetadata((int)Key.ProjectTitle, LinkElementType.Key,
metadataStructureId, XmlUtility.ToXDocument(metadata));
if (tmp != null)
{
pangaeaMetadata.ProjectIDs = tmp;
}
// Defauls sets
//ExportFileName
pangaeaMetadata.ExportFilename = Regex.Replace(pangaeaMetadata.Title, "[^0-9a-zA-Z]+", "");
return(pangaeaMetadata);
}
//ToDO -> David <- do not store the files on the server
public string Convert(long datasetVersionId)
{
DatasetManager datasetManager = new DatasetManager();
PublicationManager publicationManager = new PublicationManager();
try
{
_broker = publicationManager.GetBroker(_broker.Id);
_dataRepo = publicationManager.GetRepository(_dataRepo.Id);
/***
* Generate a txt file for pangaea
* 1. json metadata
* 2. tabseperated primary Data
*
*
* if data only unstructred, then only metadata
*/
string primaryDataFilePath = "";
#region create primary Data
primaryDataFilePath = generatePrimaryData(datasetVersionId);
#endregion
DatasetVersion datasetVersion = datasetManager.GetDatasetVersion(datasetVersionId);
long datasetId = datasetVersion.Dataset.Id;
long metadataStructureId = datasetVersion.Dataset.MetadataStructure.Id;
DataStructureDataList datastructureDataList = OutputDataStructureManager.GetVariableList(datasetId);
PanageaMetadata metadata = getMetadata(datasetVersion.Metadata, metadataStructureId);
metadata.ParameterIDs = datastructureDataList.Variables;
string json = JsonConvert.SerializeObject(metadata, Formatting.Indented);
SubmissionManager submissionManager = new SubmissionManager();
string path = submissionManager.GetDirectoryPath(datasetId, _broker.Name);
string filename = submissionManager.GetFileNameForDataRepo(datasetVersionId, datasetId, _dataRepo.Name, "txt");
string filepath = Path.Combine(path, filename);
try
{
if (File.Exists(filepath))
{
File.Delete(filepath);
}
FileHelper.Create(filepath).Close();
File.WriteAllText(filepath, json + Environment.NewLine + Environment.NewLine);
if (!string.IsNullOrEmpty(primaryDataFilePath))
{
File.AppendAllText(filepath, File.ReadAllText(primaryDataFilePath));
}
return(filepath);
}
catch (Exception exception)
{
throw exception;
}
return("");
}
finally
{
datasetManager.Dispose();
publicationManager.Dispose();
}
}
