//add log here
public void Analyze(RawFileName rawfile, UIsettings fixedSettings, SettingsForAnalysis fixedSettingsForAnalysis, IProgress <DataRow> resultRow)
{
if (IsFileLocked(rawfile.FullName))
{
Log.Error("[" + rawfile.FullName + "] CRITICAL problem: file locked by another process! Skipping file");
}
else if (IsNotRawfile(rawfile.FullName))
{
Log.Error("[" + rawfile.FullName + "] CRITICAL problem: raw file corrupt! Skipping file");
}
else
{
Log.Information("[" + rawfile.FullName + "] Main analysis started");
rawfile.SetCategories(fixedSettings.UserList, fixedSettings.LcList, fixedSettings.MsList, fixedSettings.SamplesList);
SetRawFileHistory(rawfile, fixedSettings);//This is a mess with the class lines
if (rawfile.SomethingWrongWithFileName)
{
Log.Warning("[" + rawfile.FullName + "] Please check file naming convention: parse rules and filename do not align.");
}
using (ResultItems results = new ResultItems())
{
Stopwatch stopwatch = new Stopwatch();
stopwatch.Start();
MainAnalysisThreadedTask(rawfile, fixedSettingsForAnalysis, fixedSettings, results);
Log.Information("[" + rawfile.FullName + "] Main analysis finished in " + stopwatch.Elapsed.TotalMinutes.ToString("0.00") + " minutes");
DoEmailResults(rawfile, fixedSettings, results);
DoSqlUpdateResults(rawfile, fixedSettings, results);
DoSaveResultsToFile(fixedSettings, results);
AddResultRowToDataTable(results.Names, results.Results, results.Types, fixedSettings, resultRow);
}
}
}
public string TryParseRawFile(UIsettings uisettings)
{
RawFileName rawfile = new RawFileName(uisettings.RawFileTestName);
rawfile.SetCategories(uisettings.UserList, uisettings.LcList, uisettings.MsList, uisettings.SamplesList);
return(rawfile.ReadCategories());
}