public static void create_collapse_q_metrics(base_q_metrics metric_set, base_q_collapsed_metrics collapsed)
{
c_csharp_run_metricsPINVOKE.create_collapse_q_metrics(base_q_metrics.getCPtr(metric_set), base_q_collapsed_metrics.getCPtr(collapsed));
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
}
public static void populate_cumulative_distribution(base_q_metrics q_metric_set)
{
c_csharp_run_metricsPINVOKE.populate_cumulative_distribution__SWIG_1(base_q_metrics.getCPtr(q_metric_set));
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
}
public static void create_q_metrics_by_lane(base_q_metrics metric_set, base_q_by_lane_metrics bylane, instrument_type instrument)
{
c_csharp_run_metricsPINVOKE.create_q_metrics_by_lane(base_q_metrics.getCPtr(metric_set), base_q_by_lane_metrics.getCPtr(bylane), (int)instrument);
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
}
public static void populate_legacy_q_score_bins(base_q_metrics q_metric_set, q_score_bin_vector q_score_bins, instrument_type instrument)
{
c_csharp_run_metricsPINVOKE.populate_legacy_q_score_bins__SWIG_1(base_q_metrics.getCPtr(q_metric_set), q_score_bin_vector.getCPtr(q_score_bins), (int)instrument);
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
}
public static void compress_q_metrics(base_q_metrics q_metric_set)
{
c_csharp_run_metricsPINVOKE.compress_q_metrics__SWIG_0(base_q_metrics.getCPtr(q_metric_set));
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
}
public void set_q_metric_set(base_q_metrics metrics)
{
c_csharp_run_metricsPINVOKE.run_metrics_set_q_metric_set(swigCPtr, base_q_metrics.getCPtr(metrics));
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
}
/// <summary>
/// Setup the expected and actual metric sets
/// </summary>
/// <param name="tmp">Hard coded binary data</param>
/// <param name="version">Version of the format</param>
/// <param name="header">Header for the file format</param>
protected void SetupBuffers(int[] tmp, short version, q_score_header header)
{
expected_binary_data = new byte[tmp.Length];
for(int i=0;i<expected_binary_data.Length;i++) expected_binary_data[i] = (byte)tmp[i];
expected_metric_set = new base_q_metrics(expected_metrics, version, header);
c_csharp_comm.read_interop_from_buffer(expected_binary_data, (uint)expected_binary_data.Length, actual_metric_set);
actual_metrics = actual_metric_set.metrics();
//actual_binary_data = write_metrics(actual_metric_set);
}
public static uint count_q_metric_bins(base_q_metrics metric_set)
{
uint ret = c_csharp_run_metricsPINVOKE.count_q_metric_bins__SWIG_1(base_q_metrics.getCPtr(metric_set));
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
return(ret);
}
public static uint index_for_q_value(base_q_metrics q_metric_set, uint qval)
{
uint ret = c_csharp_run_metricsPINVOKE.index_for_q_value__SWIG_0(base_q_metrics.getCPtr(q_metric_set), qval);
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
return(ret);
}
public static uint max_qval(base_q_metrics q_metric_set)
{
uint ret = c_csharp_run_metricsPINVOKE.max_qval__SWIG_0(base_q_metrics.getCPtr(q_metric_set));
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
return(ret);
}
public static bool is_compressed(base_q_metrics q_metric_set)
{
bool ret = c_csharp_run_metricsPINVOKE.is_compressed__SWIG_0(base_q_metrics.getCPtr(q_metric_set));
if (c_csharp_run_metricsPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_run_metricsPINVOKE.SWIGPendingException.Retrieve();
}
return(ret);
}
/// <summary>
/// Setup the expected and actual metric sets
/// </summary>
/// <param name="tmp">Hard coded binary data</param>
/// <param name="version">Version of the format</param>
/// <param name="header">Header for the file format</param>
protected void SetupBuffers(int[] tmp, short version, q_score_header header)
{
expected_binary_data = new byte[tmp.Length];
for (int i = 0; i < expected_binary_data.Length; i++)
{
expected_binary_data[i] = (byte)tmp[i];
}
expected_metric_set = new base_q_metrics(expected_metrics, version, header);
c_csharp_comm.read_interop_from_buffer(expected_binary_data, (uint)expected_binary_data.Length, actual_metric_set);
}
public base_q_metrics q_metric_set()
{
base_q_metrics ret = new base_q_metrics(c_csharp_run_metricsPINVOKE.run_metrics_q_metric_set(swigCPtr), false);
return(ret);
}
