string XMLSerialize(object oResult)
// http://msdn.microsoft.com/en-us/library/58a18dwa(v=VS.100).aspx
{
IXmlWritable wResult = oResult as IXmlWritable;
if (wResult != null)
{
XmlSerializer ser = new XmlSerializer(typeof(XmlElement));
TextWriter writer = new Utf8StringWriter();
XmlContext context = new XmlContext();
//
context.Document = new XmlDocument();
//
XmlElement wElement = wResult.ToXml(context);;
//
XmlElement rootElement = context.CreateElement("Root");
rootElement.Attributes.Append(context.CreateAttribute("randSeed", MiscUtil.RandSeed));
rootElement.AppendChild(wElement);
//
context.Document.AppendChild(rootElement);
//
ser.Serialize(writer, context.Document);
writer.Close();
return writer.ToString();
}
return null;
}
public XmlElement ToXml(XmlContext context)
{
XmlElement me = context.CreateElement(this.Text);
switch (this.Type)
{
// Text contents
case NadirParser.MatchClause:
case NadirParser.NoMatchClause:
case NadirParser.Adenine:
case NadirParser.Guanine:
case NadirParser.Cytosine:
case NadirParser.Thymine:
me.AppendChild(context.CreateTextNode(this.GetNadirChild(0)));
return me;
// Named thing
case NadirParser.SeqDesignerDef:
case NadirParser.ExperimentDef:
case NadirParser.VariableDef:
case NadirParser.TypedefDef:
case NadirParser.AttrDef:
case NadirParser.FunctionCall:
case NadirParser.VariableRef:
case NadirParser.FormalParam:
case NadirParser.FunctionDef:
{
// ^(Name name scope?)
//
NadirAST nodeName = this.GetNadirChild(0);
me.Attributes.Append(context.CreateAttribute("name", nodeName, 0));
if (nodeName.ChildCount > 1)
me.Attributes.Append(context.CreateAttribute("scope", nodeName, 1));
//
int iChildFirst = 1;
//
// Recurse on remaining children
//
for(int i=iChildFirst; i < this.ChildCount; i++)
{
me.AppendChild(this.GetNadirChild(i).ToXml(context));
}
//
return me;
}
case NadirParser.DomainDefRef:
{
XmlAttribute attr = context.Document.CreateAttribute("name");
attr.InnerText = this.GetNadirChild(0).Text;
me.Attributes.Append(attr);
return me;
}
// Just me and my children
default:
//
for(int i=0; i < this.ChildCount; i++)
me.AppendChild(this.GetNadirChild(i).ToXml(context));
//
return me;
}
}
public override XmlElement ToXml(XmlContext context)
{
XmlElement me = context.CreateElement("Domain");
me.Attributes.Append(context.CreateXmlIdAttribute(this));
me.Attributes.Append(context.CreateAttribute("domid", this.Id));
//
if (this.Symbol != null)
{
me.Attributes.Append(context.CreateAttribute("name", this.Symbol.DisplayName));
}
//
if (this.IsConnected)
{
me.Attributes.Append(context.CreateAttribute("connection", context.XmlIdOf(this.Connection)));
}
//
if (this.IsComplemented)
{
me.Attributes.Append(context.CreateAttribute("complemented", "true"));
}
//
// Deal with extended attributes that we didn't print by the above means.
// REVIEW: we could do better - try to unify the builtin and non-builtin attrs.
//
foreach (KeyValuePair<string,EvaluateAttributeOnce> pair in this.DefinedAttrs)
{
XmlElement domattr = context.CreateElement("DomainAttribute");
domattr.Attributes.Append(context.CreateAttribute("name", pair.Key));
domattr.Attributes.Append(context.CreateAttribute("value", pair.Value.AttributeValue));
me.AppendChild(domattr);
}
//
if (this.Nucleotides!=null && this.Nucleotides.Length > 0)
{
me.Attributes.Append(context.CreateAttribute("sequence", this.Nucleotides));
}
//
return me;
}