/// <summary>
/// Read all of the transition data from the instrument method data
/// </summary>
/// <returns></returns>
public List <TransitionData> GetAllTransitions()
{
var srmTransitions = new List <TransitionData>();
using (var rawReader = RawFileReaderFactory.ReadFile(DatasetPath))
{
//Console.WriteLine($"File \"{RawFilePath}\": {rawReader.InstrumentMethodsCount} instrument methods");
for (var i = 0; i < rawReader.InstrumentMethodsCount; i++)
{
var method = rawReader.GetInstrumentMethod(i);
//Console.WriteLine($"File \"{RawFilePath}\": InstMethod string length: {method.Length}");
if (string.IsNullOrWhiteSpace(method))
{
continue;
}
var parsed = new XCalInstMethodParser(method);
if (parsed.UsesCompoundName)
{
canUseCompoundNames = true;
}
srmTransitions.AddRange(parsed.ParseSrmTable());
}
}
//Console.WriteLine($"File \"{RawFilePath}\": {srmTransitions.Count} transitions in instrument method");
return(srmTransitions);
}
public List <TransitionData> GetAllTransitions()
{
var srmTransitions = new List <TransitionData>();
using (var reader = new XRawFileIO(DatasetPath))
{
//Console.WriteLine($"File \"{DatasetPath}\": {reader.FileInfo.InstMethods.Count} instrument methods");
foreach (var method in reader.FileInfo.InstMethods)
{
//Console.WriteLine($"File \"{DatasetPath}\": InstMethod string length: {method.Length}");
var parsed = new XCalInstMethodParser(method);
if (parsed.UsesCompoundName)
{
canUseCompoundNames = true;
}
srmTransitions.AddRange(parsed.ParseSrmTable());
}
}
//Console.WriteLine($"File \"{DatasetPath}\": {srmTransitions.Count} transitions in instrument method");
return(srmTransitions);
}
