public bool isInWrongTaxa(string taxa, WrongPositionStatus status)
{
bool isExist = false;
foreach (WrongTaxa tx in wrongPositionedTaxaList)
{
if (tx.Taxa._Taxa_Value == taxa && tx.wrongPositionStatus == status)
{
isExist = true;
break;
}
}
return(isExist);
}
//public void calculateFinalDuplication()
//{
// foreach (Quartet q in ListOfInconsistent)
// {
// foreach (WrongTaxa tx in wrongPositionedTaxaList)
// {
// PartStatus pp = fromwhichPart(tx.Taxa._Taxa_Value);
// }
// }
//}
public WrongPositionStatusClass getWrongPositionStatusClass(WrongPositionStatus status, int aStart, string taStart, int aEnd, string taEnd, int bStart, string tbStart, int bEnd, string tbEnd)
{
WrongPositionStatusClass obj = new WrongPositionStatusClass();
obj.WrongPositionStatus = status;
obj.aStart = aStart;
obj.taStart = taStart;
obj.aEnd = aEnd;
obj.taEnd = taEnd;
obj.bStart = bStart;
obj.tbStart = tbStart;
obj.bEnd = bEnd;
obj.tbEnd = tbEnd;
return(obj);
}
public WrongPositionStatus whoisInWrongPosition(int aStart, string taStart, int aEnd, string taEnd, int bStart, string tbStart, int bEnd, string tbEnd, Quartet q)
{
WrongPositionStatus status = WrongPositionStatus.None;
//Case 1
if (inBetween(aStart, bStart, aEnd) && inBetween(aStart, bEnd, aEnd) && bStart < bEnd)
{
if (isInWrongTaxa(taStart, WrongPositionStatus.aStartRight))
{
status = WrongPositionStatus.aStartRight;
}
else if (isInWrongTaxa(taEnd, WrongPositionStatus.aEndLeft))
{
status = WrongPositionStatus.aEndLeft;
}
else
{
// aStart or aEnd in wrong position
status = WrongPositionStatus.aEndLeft;
}
}
//Case 2
else if (inBetween(aStart, bStart, aEnd) && inBetween(bStart, aEnd, bEnd) && bStart < bEnd && aStart < bEnd)
{
if (isInWrongTaxa(tbStart, WrongPositionStatus.bStartRight))
{
// bStart in wrong position
status = WrongPositionStatus.bStartRight;
}
else
{
status = WrongPositionStatus.aEndLeft;
}
}
//Case 3
else if (inBetween(bStart, aStart, bEnd) && inBetween(aStart, bEnd, aEnd) && bStart < bEnd && bStart < aEnd)
{
if (isInWrongTaxa(taStart, WrongPositionStatus.aStartRight))
{
status = WrongPositionStatus.aStartRight;
}
else
{
// bEnd in wrong position
status = WrongPositionStatus.bEndLeft;
}
}
//Case 4
else if (aStart == bStart && aEnd == bEnd && aStart < aEnd)
{
if (isInWrongTaxa(taStart, WrongPositionStatus.aStartLeft))
{
status = WrongPositionStatus.aStartLeft;
}
else if (isInWrongTaxa(taStart, WrongPositionStatus.aStartRight))
{
status = WrongPositionStatus.aStartRight;
}
else if (isInWrongTaxa(taEnd, WrongPositionStatus.aEndLeft))
{
status = WrongPositionStatus.aEndLeft;
}
else if (isInWrongTaxa(taEnd, WrongPositionStatus.aEndRight))
{
status = WrongPositionStatus.aEndRight;
}
else if (isInWrongTaxa(tbStart, WrongPositionStatus.bStartLeft))
{
status = WrongPositionStatus.bStartLeft;
}
else if (isInWrongTaxa(tbStart, WrongPositionStatus.bStartRight))
{
status = WrongPositionStatus.bStartRight;
}
else if (isInWrongTaxa(tbEnd, WrongPositionStatus.bEndLeft))
{
status = WrongPositionStatus.bEndLeft;
}
else if (isInWrongTaxa(tbEnd, WrongPositionStatus.bEndRight))
{
status = WrongPositionStatus.bEndRight;
}
else
{
//bStart and bEnd both
status = WrongPositionStatus.bStartRight;
}
}
//Case 5
else if (inBetween(aStart, bStart, aEnd) && aEnd == bEnd && aStart < aEnd)
{
if (isInWrongTaxa(taEnd, WrongPositionStatus.aEndLeft))
{
status = WrongPositionStatus.aEndLeft;
}
else
{
// aEnd in wrong position
status = WrongPositionStatus.aEndLeft;
}
}
//Case 6
else if (inBetween(aStart, bEnd, aEnd) && aStart == bStart && aStart < aEnd)
{
if (isInWrongTaxa(taStart, WrongPositionStatus.aStartRight))
{
status = WrongPositionStatus.aStartRight;
}
else
{
// aStart in wrong position
status = WrongPositionStatus.aStartRight;
}
}
//Case 7
else if (aStart < aEnd && aEnd == bStart && bStart < bEnd && aStart < bEnd)
{
if (isInWrongTaxa(taEnd, WrongPositionStatus.aEndLeft))
{
status = WrongPositionStatus.aEndLeft;
}
else
{
// aStart in wrong position
status = WrongPositionStatus.bStartRight;
}
}
return(status);
}
//Main Method for calculating Wrong Position
public WrongPositionStatusClass CalculateWrongPosition(int p1, string t1, int p2, string t2, int p3, string t3, int p4, string t4, Quartet q)
{
WrongPositionStatusClass statusClass = new WrongPositionStatusClass();
WrongPositionStatus status = WrongPositionStatus.None;
if (status == WrongPositionStatus.None)
{
status = whoisInWrongPosition(p1, t1, p2, t2, p3, t3, p4, t4, q);
}
if (status != WrongPositionStatus.None)
{
statusClass = getWrongPositionStatusClass(status, p1, t1, p2, t2, p3, t3, p4, t4);
//return status;
return(statusClass);
}
if (status == WrongPositionStatus.None)
{
status = whoisInWrongPosition(p2, t2, p1, t1, p3, t3, p4, t4, q);
}
if (status != WrongPositionStatus.None)
{
statusClass = getWrongPositionStatusClass(status, p2, t2, p1, t1, p3, t3, p4, t4);
//return status;
return(statusClass);
}
//-----
if (status == WrongPositionStatus.None)
{
status = whoisInWrongPosition(p1, t1, p2, t2, p4, t4, p3, t3, q);
}
if (status != WrongPositionStatus.None)
{
statusClass = getWrongPositionStatusClass(status, p1, t1, p2, t2, p4, t4, p3, t3);
//return status;
return(statusClass);
}
if (status == WrongPositionStatus.None)
{
status = whoisInWrongPosition(p2, t2, p1, t1, p4, t4, p3, t3, q);
}
if (status != WrongPositionStatus.None)
{
statusClass = getWrongPositionStatusClass(status, p2, t2, p1, t1, p4, t4, p3, t3);
//return status;
return(statusClass);
}
//-----
if (status == WrongPositionStatus.None)
{
status = whoisInWrongPosition(p3, t3, p4, t4, p1, t1, p2, t2, q);
}
if (status != WrongPositionStatus.None)
{
statusClass = getWrongPositionStatusClass(status, p3, t3, p4, t4, p1, t1, p2, t2);
//return status;
return(statusClass);
}
if (status == WrongPositionStatus.None)
{
status = whoisInWrongPosition(p3, t3, p4, t4, p2, t2, p1, t1, q);
}
if (status != WrongPositionStatus.None)
{
statusClass = getWrongPositionStatusClass(status, p3, t3, p4, t4, p2, t2, p1, t1);
// return status;
return(statusClass);
}
//--
if (status == WrongPositionStatus.None)
{
status = whoisInWrongPosition(p4, t4, p3, t3, p1, t1, p2, t2, q);
}
if (status != WrongPositionStatus.None)
{
statusClass = getWrongPositionStatusClass(status, p4, t4, p3, t3, p1, t1, p2, t2);
// return status;
return(statusClass);
}
if (status == WrongPositionStatus.None)
{
status = whoisInWrongPosition(p4, t4, p3, t3, p2, t2, p1, t1, q);
}
if (status != WrongPositionStatus.None)
{
statusClass = getWrongPositionStatusClass(status, p4, t4, p3, t3, p2, t2, p1, t1);
// return status;
return(statusClass);
}
// return status;
return(statusClass);
}
