public override IEnumerable <AAModInfo> GetCurrentSequenceInfos()
{
int prevIndexAA = -1;
bool prevHeavy = false;
int countModsPerAA = 0;
foreach (var info in EnumerateSequenceInfos(_sequences.Current ?? string.Empty, false))
{
int indexAA = info.IndexAA;
countModsPerAA = prevIndexAA != indexAA ? 1 : countModsPerAA + 1;
bool tooManyMods = countModsPerAA > 1 && prevHeavy == info.UserIndicatedHeavy;
prevIndexAA = indexAA;
prevHeavy = info.UserIndicatedHeavy;
if (!tooManyMods)
{
yield return(info);
}
else
{
var unmatchedSeq = GetSeqModUnmatchedStr(info.IndexAAInSeq);
if (!UnmatchedSequences.Contains(unmatchedSeq))
{
UnmatchedSequences.Add(unmatchedSeq);
}
}
}
}
public void CreateMatches(SrmSettings settings, IEnumerable <string> sequences,
MappedList <string, StaticMod> defSetStatic, MappedList <string, StaticMod> defSetHeavy)
{
_sequences = sequences.GetEnumerator();
InitMatcherSettings(settings, defSetStatic, defSetHeavy);
if (UnmatchedSequences.Count > 0)
{
UnmatchedSequences.Sort();
throw new FormatException(UninterpretedMods);
}
}
public override void UpdateMatcher(AAModInfo info, AAModMatch?match)
{
if (match == null)
{
var unmatchedSeq = GetSeqModUnmatchedStr(info.IndexAAInSeq);
if (!UnmatchedSequences.Contains(unmatchedSeq))
{
UnmatchedSequences.Add(unmatchedSeq);
}
}
}
public override void UpdateMatcher(AAModInfo info, AAModMatch?match)
{
// Update unmatched sequences.
if (match == null && !UnmatchedSequences.Contains(info.ModKey.ToString()))
{
UnmatchedSequences.Add(info.ModKey.ToString());
}
if (match == null || match.Value.StructuralMod == null)
{
return;
}
// Update the conflicting mod array.
if (!string.IsNullOrEmpty(match.Value.StructuralMod.AAs))
{
AddConflictKey((byte)info.AA, info.Terminus, false);
}
if (info.Terminus != null)
{
AddConflictKey(null, info.Terminus, false);
}
}