public void TestMorphologicalErosionRBA()
{
ImageRaster3D <float> source = new ImageRaster3D <float>(5, 5, 5);
ImageRaster3D <float> target = new ImageRaster3D <float>(5, 5, 5);
source.SetElementValue(2, 2, 2, 1);
List <int[]> offsets = new List <int[]>();
offsets.Add(new int[] { 0, 0, 0 });
StructuringElement3D structure_0 = new StructuringElement3D(offsets);
ToolsImageRaster.MorphologicalErosionRBA(source, structure_0, 0, target);
Assert.AreEqual(1, target.GetElementIndexesWithValue(1).Count);
offsets.Add(new int[] { 1, 0, 0 });
offsets.Add(new int[] { -1, 0, 0 });
offsets.Add(new int[] { 0, 1, 0 });
offsets.Add(new int[] { 0, -1, 0 });
offsets.Add(new int[] { 0, 0, 1 });
offsets.Add(new int[] { 0, 0, -1 });
StructuringElement3D structure_1 = new StructuringElement3D(offsets);
ToolsImageRaster.MorphologicalErosionRBA(source, structure_1, 0, target);
Assert.AreEqual(0, target.GetElementIndexesWithValue(1).Count);
source.SetElementValue(1, 2, 2, 1);
source.SetElementValue(3, 2, 2, 1);
source.SetElementValue(2, 1, 2, 1);
source.SetElementValue(2, 3, 2, 1);
source.SetElementValue(2, 2, 1, 1);
source.SetElementValue(2, 2, 3, 1);
ToolsImageRaster.MorphologicalErosionRBA(source, structure_1, 0, target);
Assert.AreEqual(1, target.GetElementIndexesWithValue(1).Count);
}
public IImageRaster3D <bool> FindMedialAxes(IImageRaster3D <bool> image)
{
ImageRaster3D <bool> skeleton_image = ToolsImageRaster.Pad(image, false, 1, 1, 1);
ITopologyElement topology = new TopologyElementRaster3D26Connectivity(skeleton_image.Raster);
int[] euler_table = BuildEulerLookupTable();
bool changes = true;
while (changes)
{
changes = false;
List <int> candidates = ToolsImageRaster.GetShell3D6C(skeleton_image).GetElementIndexesWithValue(true);
if (candidates.Count != 0)
{
// get 26 - neighbourhoods of candidates in volume
List <int[]> neigbourhoods = new List <int[]>();
List <int> end_point_indexes = new List <int>();
for (int candidate_index = 0; candidate_index < candidates.Count; candidate_index++)
{
int[] element_neigbour_array = new int[26];
bool[] element_neigbour_true_array = new bool[26];
topology.ElementNeighboursRBA(candidates[candidate_index], element_neigbour_array);
//int count = 0;
for (int neigbour_index = 0; neigbour_index < topology.MaximumConnectivity; neigbour_index++)
{
//TODO something here
}
}
// remove all endpoints (exactly one nb) from list
neigbourhoods.RemoveAt(end_point_indexes);
candidates.RemoveAt(end_point_indexes);
// remove all non-Euler - invariant points from list
List <int> euler_variate_indexes = new List <int>();
for (int candidate_index = 0; candidate_index < candidates.Count; candidate_index++)
{
if (compute_euler_characteristic(neigbourhoods[candidate_index], euler_table))
{
euler_variate_indexes.Add(candidate_index);
}
}
neigbourhoods.RemoveAt(euler_variate_indexes);
candidates.RemoveAt(euler_variate_indexes);
List <int> is_simple_indexes = new List <int>();
for (int candidate_index = 0; candidate_index < candidates.Count; candidate_index++)
{
if (is_simple(neigbourhoods[candidate_index]))
{
is_simple_indexes.Add(candidate_index);
}
}
// remove all non-simple points from list
candidates.RemoveAt(is_simple_indexes);
//get subscript indices of remaining candidates
//TODO [x, y, z] = ind2sub(padded_image_size, candidates);
// if any candidates left: divide into 8 independent subvolumes TODO this is silly
if (candidates.Count != 0)
{
// do re-checking for all points in each subvolume
List <int> removal_indexes = new List <int>(); //sub2ind(padded_image_size, x(idx), y(idx), z(idx));
skeleton_image.SetElementValues(removal_indexes, false); // remove points
List <int[]> nh = GetNeigbourhoods(skeleton_image, removal_indexes);
List <int> di_rc = new List <int>();
for (int index = 0; index < nh.Count; index++)
{
if (!is_simple(nh[index]))
{
di_rc.Add(index);
}
}
if (di_rc.Count != 0)
{
changes = true; //% at least one voxel removed
skeleton_image.SetElementValues(di_rc, true); // TODO this seems weird
}
}
}
}
return(skeleton_image);
}